From fc055e1910413461bede0675ba6650afba5232b2 Mon Sep 17 00:00:00 2001
From: L Sikkema <32548783+LisaSikkema@users.noreply.github.com>
Date: Mon, 1 Feb 2021 17:21:58 +0100
Subject: [PATCH] added alternative name for SNP column

I'm working with GWAS summary statistics where the SNP column is called "variant_id", so added that to the dictionary.
---
 munge_sumstats.py | 1 +
 1 file changed, 1 insertion(+)

diff --git a/munge_sumstats.py b/munge_sumstats.py
index b84e98c9..6189073d 100755
--- a/munge_sumstats.py
+++ b/munge_sumstats.py
@@ -32,6 +32,7 @@
 
     # RS NUMBER
     'SNP': 'SNP',
+    'VARIANT_ID': 'SNP',
     'MARKERNAME': 'SNP',
     'SNPID': 'SNP',
     'RS': 'SNP',