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Genomic Locations of variable accessible sites associated with traits #16

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rahuldogiparthi opened this issue Nov 7, 2024 · 0 comments

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@rahuldogiparthi
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Hi

I have ATAC-seq data of two samples with and without treatment. I am interested to understand what kind of hematopoietic traits are associated with variable accessibility, so I ran the gchromVAR. I was able to get the information on traits which are showing variable accessibility between the conditions. I am assuming it's taking the mean of gchromVAR scores for a given set of regions associated with that trait and generating the data. Is there a way to retrieve these regions? I think I am missing out on the peaks information in the final output dataset of gchromVAR

Thanks!

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