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Preprocess Datasets L1000 MAT file #17

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swaraj84 opened this issue Dec 19, 2023 · 0 comments
Open

Preprocess Datasets L1000 MAT file #17

swaraj84 opened this issue Dec 19, 2023 · 0 comments

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@swaraj84
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@MarziehHaghighi

Could you please help with a portion of the 0-preprocess-datasets.ipynb, specifically in the following lines

from scipy.io import loadmat x = loadmat(cdrp_dataDir+'cdrp.all.prof.mat')

Where the source MAT file is mentioned to be generated using https://github.com/broadinstitute/2014_wawer_pnas, which is currently not available.

Any pointers towards the source file and the operations to be performed on it would be a good head start for me.

Thank you!
Swaraj

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