From eb7da359a29c85b2c22f00a466b72cafc885d59e Mon Sep 17 00:00:00 2001
From: Johannes Karwounopoulos
 <72743318+JohannesKarwou@users.noreply.github.com>
Date: Wed, 5 Jun 2024 16:36:26 +0200
Subject: [PATCH 1/5] Update setup.cfg

---
 setup.cfg | 2 +-
 1 file changed, 1 insertion(+), 1 deletion(-)

diff --git a/setup.cfg b/setup.cfg
index 31a87545..fe652ee0 100644
--- a/setup.cfg
+++ b/setup.cfg
@@ -23,7 +23,7 @@ max-line-length = 119
 [versioneer]
 # Automatic version numbering scheme
 VCS = git
-style = pep440
+style = pep440-pre
 versionfile_source = transformato/_version.py
 versionfile_build = transformato/_version.py
 tag_prefix = ''

From f6baa3563c84cc09086047c5929b795f3a55f5ca Mon Sep 17 00:00:00 2001
From: Johannes Karwounopoulos
 <72743318+JohannesKarwou@users.noreply.github.com>
Date: Wed, 5 Jun 2024 16:47:30 +0200
Subject: [PATCH 2/5] Update fep_env.yaml

---
 devtools/conda-envs/fep_env.yaml | 1 +
 1 file changed, 1 insertion(+)

diff --git a/devtools/conda-envs/fep_env.yaml b/devtools/conda-envs/fep_env.yaml
index 98069b1f..7fc1b1be 100644
--- a/devtools/conda-envs/fep_env.yaml
+++ b/devtools/conda-envs/fep_env.yaml
@@ -5,6 +5,7 @@ channels:
 dependencies:
   # Base depends
   - openmm
+  - python=3.11
   - openmmtools
   - numpy
   - ipython

From acfc650e295fee9b7d2f86af2cbee46f0512d9d4 Mon Sep 17 00:00:00 2001
From: Johannes Karwounopoulos
 <72743318+JohannesKarwou@users.noreply.github.com>
Date: Wed, 5 Jun 2024 16:57:38 +0200
Subject: [PATCH 3/5] Update setup.cfg

---
 setup.cfg | 2 +-
 1 file changed, 1 insertion(+), 1 deletion(-)

diff --git a/setup.cfg b/setup.cfg
index fe652ee0..31a87545 100644
--- a/setup.cfg
+++ b/setup.cfg
@@ -23,7 +23,7 @@ max-line-length = 119
 [versioneer]
 # Automatic version numbering scheme
 VCS = git
-style = pep440-pre
+style = pep440
 versionfile_source = transformato/_version.py
 versionfile_build = transformato/_version.py
 tag_prefix = ''

From a16d725e6617a6516a77342f4a10906ccee9bf95 Mon Sep 17 00:00:00 2001
From: Johannes Karwounopoulos
 <72743318+JohannesKarwou@users.noreply.github.com>
Date: Wed, 5 Jun 2024 16:58:39 +0200
Subject: [PATCH 4/5] Update fep_env.yaml

---
 devtools/conda-envs/fep_env.yaml | 2 +-
 1 file changed, 1 insertion(+), 1 deletion(-)

diff --git a/devtools/conda-envs/fep_env.yaml b/devtools/conda-envs/fep_env.yaml
index 7fc1b1be..ad9bbfbb 100644
--- a/devtools/conda-envs/fep_env.yaml
+++ b/devtools/conda-envs/fep_env.yaml
@@ -5,7 +5,7 @@ channels:
 dependencies:
   # Base depends
   - openmm
-  - python=3.11
+  - python<3.12
   - openmmtools
   - numpy
   - ipython

From fe52a3a0da9b470ad60f180713c9f55fd3792cad Mon Sep 17 00:00:00 2001
From: Johannes Karwounopoulos
 <72743318+JohannesKarwou@users.noreply.github.com>
Date: Wed, 5 Jun 2024 17:15:54 +0200
Subject: [PATCH 5/5] Update CI.yaml

---
 .github/workflows/CI.yaml | 10 +++++-----
 1 file changed, 5 insertions(+), 5 deletions(-)

diff --git a/.github/workflows/CI.yaml b/.github/workflows/CI.yaml
index 60a57b4f..d7c56763 100644
--- a/.github/workflows/CI.yaml
+++ b/.github/workflows/CI.yaml
@@ -47,7 +47,7 @@ jobs:
           #  miniforge-variant: Mambaforge-pypy3
 
     steps:
-    - uses: actions/checkout@v4.1.1
+    - uses: actions/checkout@v4.1.6
 
     - name: Additional info about the build
       shell: bash
@@ -61,7 +61,7 @@ jobs:
       
     - name: Make Cache (no worflow_dispatch)
       if: ${{ github.event_name != 'workflow_dispatch' }}
-      uses: actions/cache@v3.3.2
+      uses: actions/cache@v4.0.2
       with:
         path: ~/conda_pkgs_dir # ${{ matrix.prefix }}
         # Increase the last number (0) to reset cache manually
@@ -70,7 +70,7 @@ jobs:
       
     - name: Make Cache (worflow_dispatch)
       if: ${{ github.event_name == 'workflow_dispatch' }}
-      uses: actions/cache@v3.3.2
+      uses: actions/cache@v4.0.2
       with:
         path: ~/conda_pkgs_dir # ${{ matrix.prefix }}
         key: ${{ matrix.label }}-conda-${{ hashFiles('devtools/conda-envs/fep_env.yaml') }}-${{ env.DATE }}-${{ inputs.CACHE_NUMBER }}
@@ -78,7 +78,7 @@ jobs:
 
 
     # More info on options: https://github.com/conda-incubator/setup-miniconda
-    - uses: conda-incubator/setup-miniconda@v3.0.1
+    - uses: conda-incubator/setup-miniconda@v3.0.4
       with:
         python-version: ${{ matrix.python-version }}
         condarc-file: ${{ matrix.condarc-file }}
@@ -122,7 +122,7 @@ jobs:
         pytest -v --cov=transformato --cov-report=xml --color=yes transformato/tests/
 
     - name: CodeCov
-      uses: codecov/codecov-action@v3.1.4
+      uses: codecov/codecov-action@v4.4.1
       with:
         file: ./coverage.xml
         flags: unittests