Skip to content
New issue

Have a question about this project? Sign up for a free GitHub account to open an issue and contact its maintainers and the community.

Sign up for GitHub

By clicking “Sign up for GitHub”, you agree to our terms of service and privacy statement. We’ll occasionally send you account related emails.

Already on GitHub? Sign in to your account

Jump to bottom

CTC-SCITE runs not integrated into snakemake pipeline. #2

Open
JohannesGawron opened this issue Jul 18, 2024 · 0 comments
Open

CTC-SCITE runs not integrated into snakemake pipeline. #2

JohannesGawron opened this issue Jul 18, 2024 · 0 comments
Assignees
@JohannesGawron
Labels
enhancement New feature or request

Comments

@JohannesGawron
Copy link
Collaborator

The script to run CTC-SCITE on the data in the publication can be found as runAll.py und the experiments/assessing_cluster_clonality/sandbox/ subdirectory. To support full reproducibility, this analysis step should be integrated into the snakemake pipeline.
@JohannesGawron JohannesGawron added the enhancement New feature or request label Jul 18, 2024
@JohannesGawron JohannesGawron self-assigned this Jul 18, 2024
Sign up for free to join this conversation on GitHub. Already have an account? Sign in to comment
Assignees

@JohannesGawron JohannesGawron

Labels
enhancement New feature or request
Projects
None yet
Milestone
No milestone
Development

No branches or pull requests
1 participant
@JohannesGawron