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UPDATES.md

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Updates:

  • 20200508 - v0.2.2 - Minor changes to custommargin to make it work with newer matplotlib
  • 20200501 - v0.2.1 - Minor changes related to setting matplotlib params
  • 20200215 - v0.1.924 - Made some minor updates to work with python 3.7 and the latest version of pandas,
  • 20171130 - v0.1.86 - some changes by @wdecoster to integrate pauvre into nanoplot, as well as some formatting changes that may make pauvre work better with python2.7. Adding Travis-CI functionality.
  • 20171025 - v0.1.83 - added some changes to make marginplot interface with @wdecoster's nanoPlot package, and made pauvre stats only output data tables for filtered reads. pauvre stats also now has the --filt_maxlen, --filt_maxqual, --filt_minlen, and --filt_minqual options.
  • 20171018 - v0.1.8 - you can now filter reads and adjust the plotting viewing window. See below for a demonstration. I added the following options:
  --filt_maxlen FILT_MAXLEN
                        This sets the max read length filter reads.
  --filt_maxqual FILT_MAXQUAL
                        This sets the max mean read quality to filter reads.
  --filt_minlen FILT_MINLEN
                        This sets the min read length to filter reads.
  --filt_minqual FILT_MINQUAL
                        This sets the min mean read quality to filter reads.
  --plot_maxlen PLOT_MAXLEN
                        Sets the maximum viewing area in the length dimension.
  --plot_maxqual PLOT_MAXQUAL
                        Sets the maximum viewing area in the quality
                        dimension.
  --plot_minlen PLOT_MINLEN
                        Sets the minimum viewing area in the length dimension.
  --plot_minqual PLOT_MINQUAL
                        Sets the minimum viewing area in the quality
                        dimension.
  • 20171014 - uploading information on pauvre redwood and pauvre synteny usage.
  • 20171012 - made pauvre stats more consistently produce useful histograms. pauvre stats now also calculates some statistics for different size ranges.
  • 20170529 - added automatic scaling to the input fastq file. It scales to show the highest read quality and the top 99th percentile of reads by length.