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issue with FEAST matrix #63

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lorenzovergani89 opened this issue Jun 6, 2024 · 0 comments
Open

issue with FEAST matrix #63

lorenzovergani89 opened this issue Jun 6, 2024 · 0 comments

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@lorenzovergani89
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Dear FEST group,
I am traying to use FEAST with a dataset that includes multiple sinks (A, B and C, each of them with replicate samples) teach tested with distinct sources (a different one with replicate samples for each set of sinks). I set different_sources_flag = 1, but I guess I did something wrong when preparing the metadata and count imput table, as I get the following errors:

Error in if (sum(x[i, ]) > maxdepth) { :
missing value where TRUE/FALSE needed
In addition: Warning messages:
1: In matrix(sinks, nrow = 1, ncol = dim(totalsource)[2]) :
data length differs from size of matrix: [32736 != 1 x 1364]
2: In matrix(sinks, nrow = 1, ncol = dim(totalsource)[2]) :
data length differs from size of matrix: [32736 != 1 x 1364]
3: In matrix(sinks, nrow = 1, ncol = dim(totalsource)[2]) :
data length differs from size of matrix: [16368 != 1 x 1364]

Any suggestions?

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