compile/install error

[toehold]

Hi,

when trying to compile/install with this command:
python install.py --tests median --clean

---

                GEDLIB 1.0                    
            Installation Script               

---

***** External libraries already installed. *****

***** Create directories for shared libraries, executables and output. *****

***** Clean build directory. *****

***** Goto build directory. *****

***** Run CMake. *****
-- The C compiler identification is GNU 4.9.4
-- The CXX compiler identification is GNU 4.9.4
-- Check for working C compiler: /usr/bin/cc
-- Check for working C compiler: /usr/bin/cc -- works
-- Detecting C compiler ABI info
-- Detecting C compiler ABI info - done
-- Check for working CXX compiler: /usr/bin/c++
-- Check for working CXX compiler: /usr/bin/c++ -- works
-- Detecting CXX compiler ABI info
-- Detecting CXX compiler ABI info - done
-- Building GEDLIB with build type 'Release'.
-- Found Doxygen: /usr/bin/doxygen (found version "1.8.6")
-- Configuring done
-- Generating done
-- Build files have been written to: /data/juno/gedlib/build

***** Build test executables. *****
Scanning dependencies of target gxlgedlib
[ 25%] Building CXX object src/CMakeFiles/gxlgedlib.dir/env/ged_env.gxl.cpp.o
Linking CXX shared library ../../lib/libgxlgedlib.so
[ 25%] Built target gxlgedlib
Scanning dependencies of target median_tests
[ 50%] Building CXX object median/CMakeFiles/median_tests.dir/tests/median_tests.cpp.o
Linking CXX executable ../../median/bin/median_tests
../../lib/libgxlgedlib.so: undefined reference to GOMP_critical_end' ../../lib/libgxlgedlib.so: undefined reference to omp_get_thread_num'
../../lib/libgxlgedlib.so: undefined reference to GOMP_loop_ull_dynamic_start' ../../lib/libgxlgedlib.so: undefined reference to omp_get_num_threads'
../../lib/libgxlgedlib.so: undefined reference to GOMP_parallel' ../../lib/libgxlgedlib.so: undefined reference to omp_get_max_threads'
../../lib/libgxlgedlib.so: undefined reference to GOMP_loop_end_nowait' ../../lib/libgxlgedlib.so: undefined reference to GOMP_loop_ull_dynamic_next'
../../lib/libgxlgedlib.so: undefined reference to GOMP_critical_start' ../../lib/libgxlgedlib.so: undefined reference to omp_set_num_threads'
../../lib/libgxlgedlib.so: undefined reference to GOMP_loop_dynamic_next' ../../lib/libgxlgedlib.so: undefined reference to GOMP_loop_dynamic_start'
collect2: error: ld returned 1 exit status
make[3]: *** [../median/bin/median_tests] Error 1
make[2]: *** [median/CMakeFiles/median_tests.dir/all] Error 2
make[1]: *** [median/CMakeFiles/median.dir/rule] Error 2
make: *** [median] Error 2

***** Successfully installed GEDLIB. *****

Any ideas?

[dbblumenthal]

Sorry for replying so late. Seems to be a problem with OpenMP. On which system are you working?