diff --git a/README.md b/README.md index 96432f9..ceabc0b 100644 --- a/README.md +++ b/README.md @@ -239,7 +239,7 @@ bin/purge_dups -2 -T cutoffs -c PB.base.cov $pri_asm.split.self.paf.gz > dups.be ``` bin/get_seqs dups.bed $pri_asm ``` -This command will remove both haplotypic duplications at the ends or in the middle of the contigs. If you just want to remove the duplications at the ends, please use `-e` option. For more options, please refer to `get_seqs -h`. +**Notice** this command will remove haplotypic duplications at the ends and in the middle of the contigs. If you just want to remove the duplications at the ends, please use `-e` option. For more options, please refer to `get_seqs -h`. ### Step 4. Merge hap.fa and $hap_asm and redo the above steps to get a decent haplotig set.