dissertation.tex

% UC Merced  PhD Dissertation Template
% (UCSD Mathematics Dissertation Template is modified according to the UC Merced guidelines by Lasith Adhikari. Not responsible for any issues regarding modifications. You are welcome to add/update if there is any missing requirernment)
%
% Please read the comments in this file and make appropriate edits.
% NOTE: Always refer to the ``Preperation and Submission Manual for 
% Doctoral Dissertations and Masters Theses for 20**'', where 20** is 
% the year of your graduation, for officiation preparations guidelines.
%
% If you desire more control, please see the attached files:
%   * ucsd.cls -- Class file
%   * uct10.clo, uct11.clo, uct12.clo -- Configuration files for font sizes 10pt,11pt,12pt
%
% CHANGELOG:
%   * Original file adapted from brockman.tex by JRB and RMR
%     to work with ucsd.cls


\documentclass[11pt,oneside,chapterheads]{UCMerced}
% documentclass options: default is 11pt, oneside, final.
% fonts: 10pt, 11pt, 12pt -- are valid for UCSD dissertations (now UC Merced).
% sides: oneside, twoside -- note that two-sided theses are not accepted by OGS
% mode: draft, final -- draft mode switches to single spacing, removes hyperlinks,
%                       and places a black box at every overfull hbox (check these before submission).
% chapterheads -- include this if you want your chapters to read:
% Chapter 1
% Title of Chapter
%
% instead of
%
% 1 Title of Chapter


% Include all packages you need here.  Some standard options are suggested below.

% GEOMETRY - This will force the use of Letter paper.
% Many TeX installations default to A4 paper.  The formatting
% of the thesis class file requires Letter, else the margins
% will be wrong when you go to print it (and OGS will complain).
% If your TeX implementation is not setup for Letter paper, and
% you cannot change it, uncommenting the following line may fix 
% problem.
% \usepackage[paper=letterpaper]{geometry}

\usepackage{graphicx}

%% AMS PACKAGES - Chances are you will want some or all of these if writing a math dissertation.
\usepackage{amsmath, amscd, amssymb, amsthm}
\usepackage{multicol}
\usepackage{tabulary}
\usepackage{tabularx}
\usepackage{makecell}
\usepackage{pgfplots}
\usepackage{longtable}
\usepackage{url}
\usepackage{float}
\usepackage{subcaption}
\usepackage{booktabs}
\usepackage{algorithm}
\usepackage{algorithmic}
\usepackage[Lenny]{fncychap}
\usepackage{pdfpages}
\usepackage{graphbox}

%% LATIN MODERN FONTS (replacements for Computer Modern)
\usepackage{lmodern}
\usepackage[T1]{fontenc}

\usepackage{url}
\usepackage[colorlinks=true, pdfstartview=FitV, linkcolor=black, citecolor=black, urlcolor=black,plainpages=false,pdfpagelabels]{hyperref}
\usepackage{cleveref}
\usepackage[backend=biber,style=apa,sortcites=false,minnames=1,maxnames=3,maxbibnames=4]{biblatex}
\makeatletter
\DeclareCiteCommand{\fullcite}
{\defcounter{maxnames}{\blx@maxbibnames}%
\usebibmacro{prenote}}
{\usedriver
{\DeclareNameAlias{sortname}{default}}
{\thefield{entrytype}}}
{\multicitedelim}
{\usebibmacro{postnote}}
\DeclareCiteCommand{\footfullcite}[\mkbibfootnote]
{\defcounter{maxnames}{\blx@maxbibnames}%
\usebibmacro{prenote}}
{\usedriver
{\DeclareNameAlias{sortname}{default}}
{\thefield{entrytype}}}
{\multicitedelim}
{\usebibmacro{postnote}}
\makeatother

\addbibresource{EY_thesis.bib}
\let\cite\parencite

\theoremstyle{plain}% default
\newtheorem{theorem}{Theorem}[section]
\newtheorem{lemma}[theorem]{Lemma}
\newtheorem{proposition}[theorem]{Proposition}
\theoremstyle{definition}
\newtheorem{definition}{Definition}[section]

%--Additional packages----------EY----------------------------------------------------
\usepackage{mathtools}
\usepackage{arydshln}
\usepackage{epsfig}
\usepackage{framed}
\usepackage{bm}
\usepackage{palatino,verbatim}
\usepackage{indentfirst}
%-----------------------------------------------------------------------------------


\begin{document}

\title{Flows of settling marine aggregates 
\\
and complex fluid rheology}
\author{Eunji Yoo}
\degreeyear{2023}
\degree{Doctor of Philosophy}  
\field{Applied Mathematics}

\numberofmembers{4} % |chair|  + |othermembers| (do not count co-chair) % change here
\chair{François Blanchette}
\cochair{Shilpa Khatri}

\memberone{Changho Kim}
\membertwo{Camille Carvalho (Institut National des Sciences Appliquées de Lyon)}
\memberthree{Ishan Srivastava (Lawrence Berkeley National Laboratory)}
% \memberfour{<COMMITTEE MEMBER 4>}




\begin{frontmatter}
\makefrontmatter % The title, copyright, and signature pages.

\tableofcontents
\listoffigures
\listoftables

%% DEDICATION
\begin{dedication}
    To my family, Dr. Dallerit 
    \\
    To my friends, Diversity 101 \& Susan   
    \\
    To my heavenly Father 
    \\
    I can do all things through Him who strengthens me.
    \\
    \hspace{65mm} - Philippians 4:13 
\end{dedication}

%% ACKNOWLEDGEMENTS
\begin{acknowledgements} 
    \input{0_acknowledgements.tex}
\end{acknowledgements}

%% Vita
% {
% \phantomsection
% \addcontentsline{toc}{chapter}{\protect\numberline{}Curriculum Vitae}%
% \includepdf[pages=1-,pagecommand={\thispagestyle{preliminary}}]{cv/cv.pdf}
% } 

%% Abstract
\begin{abstract}  
    \input{0_abstract.tex}
\end{abstract}

\end{frontmatter}

%%% DISSERTATION
\chapter{Introduction}
\label{ch:intro}
\input{1_introduction.tex}

\chapter{Settling marine aggregates in a homogeneous fluid}
\label{ch:2}
\input{2_chap2.tex}

%% Add more chapters here if necessary

\chapter{Settling marine aggregates in a stratified fluid}
\label{ch:3}
\input{3_chap3.tex} 

\chapter{Continuum modeling of a complex fluid}
\label{ch:4}
\input{4_chap4.tex} 

\chapter{Conclusion}
\label{ch:conclusion}
\input{5_conclusion.tex} 

%% BIBLIOGRAPHY
\addcontentsline{toc}{chapter}{Bibliography}
\printbibliography

%% APPENDIX
\appendix
\chapter{Appendix for Chapter 2}
\label{ap:chapter2}
\input{2_chap2_appendix.tex}

\end{document}