.gitignore

# MACOS
.DS_Store

# atropos
.adapters

# History files
.Rhistory
.Rapp.history

# Session Data files
.RData
.Rds

# User-specific files
.Ruserdata

# Example code in package build process
*-Ex.R

# Output files from R CMD build
/*.tar.gz

# Output files from R CMD check
/*.Rcheck/

# RStudio files
.Rproj.user/

# produced vignettes
vignettes/*.html
vignettes/*.pdf

# OAuth2 token, see https://github.com/hadley/httr/releases/tag/v0.3
.httr-oauth

# knitr and R markdown default cache directories
*_cache/
/cache/

# raw fastq.files
fastq.gz
fasta

# Temporary files created by R markdown
*.utf8.md
*.knit.md
*.fasta
dada2/03_dada2_mergerun_collapsenomismatch_NO/no-chim-seqtab.rds
dada2/03_dada2_mergerun_collapsenomismatch_NO/physeq.rds
dada2/03_dada2_mergerun_collapsenomismatch_NO/seqtab_distrib.pdf
dada2/03_dada2_mergerun_collapsenomismatch_NO/track_analysis.tsv
*.pdf
*.RData
*.rds
*.tsv
*.pdf
*.pdf