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Using the strand argument is deprecated, and will be removed in a future release. Please set it via the location object instead.
Traceback (most recent call last):
File "/home/pseudofinder/pseudofinder.py", line 42, in
annotate.main()
File "/home/pseudofinder/modules/annotate.py", line 1116, in main
proteome = extract_features_from_genome(args, genome, 'CDS')
File "/home/pseudofinder/modules/annotate.py", line 192, in extract_features_from_genome
feature_list = list(set(feature_list))
TypeError: unhashable type: 'SeqFeature'
Seems to be a problem with BioPython but I cannot find any container with the previous version of pseudofinder containing the needed version of biopython.
Any help would be appreciated.
Thanks in advance!
The text was updated successfully, but these errors were encountered:
While trying to run a full annotate + dn/ds:
python3 /home/pseudofinder/pseudofinder.py annotate --genome X.gbk --reference Y.gbk --database /home/plasmidfinder_db/DB.fasta --outprefix X
Im getting the following error:
/home/.local/lib/python3.10/site-packages/Bio/SeqFeature.py:257: BiopythonDeprecationWarning:
Using the strand argument is deprecated, and will be removed in a future release. Please set it via the location object instead.
Traceback (most recent call last):
File "/home/pseudofinder/pseudofinder.py", line 42, in
annotate.main()
File "/home/pseudofinder/modules/annotate.py", line 1116, in main
proteome = extract_features_from_genome(args, genome, 'CDS')
File "/home/pseudofinder/modules/annotate.py", line 192, in extract_features_from_genome
feature_list = list(set(feature_list))
TypeError: unhashable type: 'SeqFeature'
Seems to be a problem with BioPython but I cannot find any container with the previous version of pseudofinder containing the needed version of biopython.
Any help would be appreciated.
Thanks in advance!
The text was updated successfully, but these errors were encountered: