Presentation.ipynb

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   "source": [
    "from IPython.display import Image"
   ]
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    "# Build your own Virtual Research Environment for Reproducible Research\n",
    "\n",
    "\n",
    "### Georgios Kaklamanos\n",
    "\n",
    "#### 17.07.2017\n",
    "\n",
    "\n",
    "\n",
    "Gesellschaft für wissenschaftliche Datenverarbeitung Göttingen\n",
    "\n",
    "Georg-August-Universität Göttingen"
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   "source": [
    "## Topics\n",
    "- Reproducible Research"
   ]
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   "source": [
    "- Data & Project Organization"
   ]
  },
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   "metadata": {
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   },
   "source": [
    "- Automation"
   ]
  },
  {
   "cell_type": "markdown",
   "metadata": {
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   },
   "source": [
    "- Publication & Sharing"
   ]
  },
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   },
   "source": [
    "## Reproducible Research"
   ]
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   "source": [
    "### Hypothetical Scenarios"
   ]
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   "source": [
    "#### Submitted a Paper\n",
    "- Review process takes months\n",
    "- Requests to modify parameters / figures\n",
    "- Need to run / modify code from 6 months ago"
   ]
  },
  {
   "cell_type": "markdown",
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   "source": [
    "#### Found Interesting Paper\n",
    "- No Source Code\n",
    "- No data"
   ]
  },
  {
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    "#### Received a zip archive from colleague\n",
    "- Contains data and code\n",
    "\n",
    "- Original author has left\n",
    "\n",
    "- Code doesn't compile\n",
    "\n",
    "- No Documentation"
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  {
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   "source": [
    "- Program is _critical_ for the lab"
   ]
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   "source": [
    "- **These are global reproducibility problems**"
   ]
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    "### Crisis of Reproducibility\n",
    "\n",
    "- 70% of researchers\n",
    "  - Failed to reproduce other scientists experiments\n",
    "\n",
    "\n",
    "- 50% of researchers\n",
    "  - Failed to reproduce their own experiments\n",
    "\n",
    "\n",
    "<img style=\"float: center; width: 50%;\" src=\"images/reproducibility-graphic-online1.png\">\n"
   ]
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   "source": [
    "#### Across the fields\n",
    "\n",
    "- Phycology, 2006 study [2}"
   ]
  },
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   "source": [
    "#### Received a zip archive from colleague\n",
    "- Contains data and code\n",
    "\n",
    "- Original author has left\n",
    "\n",
    "- Code doesn't compile\n",
    "\n",
    "- No Documentation"
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   "source": [
    "#### Received a zip archive from colleague\n",
    "- Contains data and code\n",
    "\n",
    "- Original author has left\n",
    "\n",
    "- Code doesn't compile\n",
    "\n",
    "- No Documentation"
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   "source": [
    "#### Received a zip archive from colleague\n",
    "- Contains data and code\n",
    "\n",
    "- Original author has left\n",
    "\n",
    "- Code doesn't compile\n",
    "\n",
    "- No Documentation"
   ]
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   },
   "source": [
    "#### Received a zip archive from colleague\n",
    "- Contains data and code\n",
    "\n",
    "- Original author has left\n",
    "\n",
    "- Code doesn't compile\n",
    "\n",
    "- No Documentation"
   ]
  }
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