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Vendored libraries

Licenses

See each package for license information.

URLs

https://github.com/samtools/samtools/releases/download/1.10/samtools-1.10.tar.bz2

https://www.zlib.net/zlib-1.2.11.tar.gz

https://sourceware.org/pub/bzip2/bzip2-1.0.8.tar.gz

https://tukaani.org/xz/xz-5.2.4.tar.gz

https://curl.haxx.se/download/curl-7.67.0.tar.gz

https://tls.mbed.org/download/mbedtls-2.16.4-apache.tgz

boost-1.55-bamrc.tar.gz is a custom subset of the Boost library.

Makefile.disable_curl.patch is not currently used, but can be enabled to disable building of curl.

Notes

We chose mbedtls-2.16.4-apache.tgz for libcurl SSL support as it has no additional dependencies. This is used (via https) to query the ENA CRAM registry for reference hashes.

Instead of libcurl another good option might be wolfSSL's tiny-cURL distribution, which builds a lighter curl library.