From e35807a3b1ffb2ae521de2da7e099c31c1abbd15 Mon Sep 17 00:00:00 2001 From: Lucas Brambrink Date: Thu, 5 Sep 2024 17:30:28 -0700 Subject: [PATCH] updates css --- ...-insights-from-hiding-information.markdown | 25 ++++++++++++++----- 1 file changed, 19 insertions(+), 6 deletions(-) diff --git a/_posts/2024-09-04-blindfolding-deepvariant-surprising-insights-from-hiding-information.markdown b/_posts/2024-09-04-blindfolding-deepvariant-surprising-insights-from-hiding-information.markdown index 4caf3293..c9322143 100644 --- a/_posts/2024-09-04-blindfolding-deepvariant-surprising-insights-from-hiding-information.markdown +++ b/_posts/2024-09-04-blindfolding-deepvariant-surprising-insights-from-hiding-information.markdown @@ -19,10 +19,15 @@ authors: ["msamman", "danielecook", "awcarroll", "lucasbrambrink"] margin-left: -100px; } @media (min-width: 1200px) { - max-width: 1000px; + max-width: 1100px; margin-left: -100px; } } +figcaption { + text-align: left; + margin: auto; + width: 90%; +} @@ -69,21 +74,29 @@ In order to gain a better understanding of each channel's contribution to overal
Figure 2(a): A pileup image with the base_differs_from_ref channel ablated -
Figure 2(a): A pileup image with the base_differs_from_ref channel ablated.
+
+ Figure 2(a): A pileup image with the base_differs_from_ref channel ablated. +
The second set of models were trained on just a **single** channel chosen from the default channels. These experiments isolate the information contained in each of the channels separately. The following illustration is an example of isolating the `read_base` channel.
- Figure 2(b): A single channel pileup image, showing only read_base information -
A single channel pileup image, showing only read_base information.
+ Figure 2(b): A single channel pileup image, showing only read_base information +
Figure 2(b): A single channel pileup image, showing only read_base information. +
Included in our set of single channel experiments is a model trained on a completely blank channel (i.e. a black image). This model receives absolutely no information about any candidate and acts as a floor for expected performance.
- Figure 2(b): An example of a blank channel, containing no information about reads or reference -
An example of a blank channel, containing no information about reads or reference.
+ Figure 2(b): An example of a blank channel, containing no information about reads or reference +
Figure 2(c): An example of a blank channel, containing no information about reads or reference. +
All models were trained using our standard GIAB Illumina WGS dataset and evaluated on HG003.