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Bioconda recipe update failure #14778

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mjsteinbaugh opened this issue Jan 8, 2025 · 0 comments
Open

Bioconda recipe update failure #14778

mjsteinbaugh opened this issue Jan 8, 2025 · 0 comments
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needs-triage A brand new issue that needs triaging.

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@mjsteinbaugh
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mjsteinbaugh commented Jan 8, 2025

What happened?

Hi Hail development team,

I'm trying to update Hail on Bioconda to build versions 0.2.127 (required for gentropy bioconda/bioconda-recipes#53099) and the current release version 0.2.133 release version.

I'm hitting a build issue that I'm having trouble debugging, and any assistance would be greatly appreciated!

Hail 0.2.127 build failure
bioconda/bioconda-recipes#53142

Best,
Mike

Version

0.2.127

Relevant log output

2025-01-08T18:46:51.4895498Z 18:46:49 �[32mBIOCONDA INFO�[0m (OUT) Installing collected packages: hail�[0m
2025-01-08T18:46:51.4895951Z 18:46:50 �[32mBIOCONDA INFO�[0m (OUT) Successfully installed hail-0.2.127�[0m
2025-01-08T18:46:51.4896427Z 18:46:50 �[32mBIOCONDA INFO�[0m (OUT) hailctl config set query/backend spark�[0m
2025-01-08T18:46:51.4896881Z 18:46:51 �[32mBIOCONDA INFO�[0m (OUT) Traceback (most recent call last):�[0m
2025-01-08T18:46:51.4898272Z 18:46:51 �[32mBIOCONDA INFO�[0m (OUT)   File "/opt/conda/conda-bld/hail_1736361598998/_h_env_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehol/bin/hailctl", line 7, in <module>�[0m
2025-01-08T18:46:51.4899565Z 18:46:51 �[32mBIOCONDA INFO�[0m (OUT)     from hailtop.hailctl.__main__ import main�[0m
2025-01-08T18:46:51.4901348Z 18:46:51 �[32mBIOCONDA INFO�[0m (OUT)   File "/opt/conda/conda-bld/hail_1736361598998/_h_env_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehol/lib/python3.10/site-packages/hailtop/hailctl/__main__.py", line 1, in <module>�[0m
2025-01-08T18:46:51.4902722Z 18:46:51 �[32mBIOCONDA INFO�[0m (OUT)     import typer�[0m
2025-01-08T18:46:51.4903155Z 18:46:51 �[32mBIOCONDA INFO�[0m (OUT) ModuleNotFoundError: No module named 'typer'�[0m
2025-01-08T18:46:51.4903656Z 18:46:51 �[32mBIOCONDA INFO�[0m (OUT) make: *** [Makefile:396: install] Error 1�[0m
2025-01-08T18:46:51.4904121Z 18:46:51 �[32mBIOCONDA INFO�[0m (OUT) Traceback (most recent call last):�[0m
2025-01-08T18:46:51.4904768Z 18:46:51 �[32mBIOCONDA INFO�[0m (OUT)   File "/opt/conda/lib/python3.10/site-packages/conda_build/build.py", line 2558, in build�[0m
2025-01-08T18:46:51.4905351Z 18:46:51 �[32mBIOCONDA INFO�[0m (OUT)     utils.check_call_env(�[0m
2025-01-08T18:46:51.4905997Z 18:46:51 �[32mBIOCONDA INFO�[0m (OUT)   File "/opt/conda/lib/python3.10/site-packages/conda_build/utils.py", line 404, in check_call_env�[0m
2025-01-08T18:46:51.4906741Z 18:46:51 �[32mBIOCONDA INFO�[0m (OUT)     return _func_defaulting_env_to_os_environ("call", *popenargs, **kwargs)�[0m
2025-01-08T18:46:51.4907559Z 18:46:51 �[32mBIOCONDA INFO�[0m (OUT)   File "/opt/conda/lib/python3.10/site-packages/conda_build/utils.py", line 380, in _func_defaulting_env_to_os_environ�[0m
@mjsteinbaugh mjsteinbaugh added the needs-triage A brand new issue that needs triaging. label Jan 8, 2025
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