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NAMESPACE
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# Generated by roxygen2: do not edit by hand
S3method(get_compartment,character)
S3method(get_compartment,ht_table)
S3method(print,ht_table)
export("hic_genome<-")
export("hic_norm<-")
export("hic_sample<-")
export("hic_type<-")
export(comp_correlation)
export(concat_hic)
export(convert_hic_matrix)
export(decay)
export(get_compartment)
export(hic_genome)
export(hic_norm)
export(hic_resol)
export(hic_sample)
export(hic_type)
export(hicexplorer_pca)
export(ht_table)
export(load_hic)
export(load_hic_cool)
export(load_hic_genbed)
export(load_juicer_dump)
export(load_juicer_hic)
export(load_juicer_short)
export(normalize_hic)
export(oe_ht)
export(oe_juicer)
export(orient_compartment)
export(pearson_ht)
export(pearson_juicer)
export(plot_compartment)
export(plot_compartment_scatter)
export(plot_hic_matrix)
export(strat_dist)
export(write_cool)
export(write_hic)
export(write_hic_bedtorch)
export(write_hic_matrix)
export(write_juicer_hic)
export(write_juicer_short)
import(ggplot2)
importFrom(GenomeInfoDb,`seqinfo<-`)
importFrom(GenomeInfoDb,`seqlevels<-`)
importFrom(GenomeInfoDb,`seqnames<-`)
importFrom(GenomeInfoDb,seqinfo)
importFrom(GenomeInfoDb,seqlengths)
importFrom(GenomeInfoDb,seqlevels)
importFrom(GenomeInfoDb,seqnames)
importFrom(GenomicRanges,`mcols<-`)
importFrom(GenomicRanges,`ranges<-`)
importFrom(GenomicRanges,findOverlaps)
importFrom(GenomicRanges,makeGRangesFromDataFrame)
importFrom(GenomicRanges,mcols)
importFrom(GenomicRanges,pintersect)
importFrom(GenomicRanges,ranges)
importFrom(GenomicRanges,width)
importFrom(S4Vectors,from)
importFrom(S4Vectors,queryHits)
importFrom(S4Vectors,subjectHits)
importFrom(S4Vectors,to)
importFrom(assertthat,are_equal)
importFrom(assertthat,assert_that)
importFrom(data.table,as.data.table)
importFrom(data.table,data.table)
importFrom(data.table,fread)
importFrom(data.table,fwrite)
importFrom(data.table,rbindlist)
importFrom(data.table,setDT)
importFrom(data.table,setkey)
importFrom(data.table,setnames)
importFrom(data.table,shift)
importFrom(dplyr,`%>%`)
importFrom(dplyr,arrange)
importFrom(dplyr,as_tibble)
importFrom(dplyr,desc)
importFrom(dplyr,filter)
importFrom(dplyr,mutate)
importFrom(dplyr,rename)
importFrom(dplyr,select)
importFrom(dplyr,tibble)
importFrom(magrittr,`%<>%`)
importFrom(magrittr,set_attr)
importFrom(purrr,`%||%`)
importFrom(purrr,discard)
importFrom(purrr,keep)
importFrom(purrr,map)
importFrom(purrr,map_chr)
importFrom(purrr,map_dbl)
importFrom(purrr,map_dfr)
importFrom(purrr,map_int)
importFrom(purrr,map_lgl)
importFrom(purrr,pmap_chr)
importFrom(purrr,pmap_dfr)
importFrom(purrr,pwalk)
importFrom(purrr,walk)
importFrom(readr,read_delim)
importFrom(readr,read_lines)
importFrom(rhdf5,h5read)
importFrom(rlang,is_character)
importFrom(rlang,is_double)
importFrom(rlang,is_integer)
importFrom(rlang,is_null)
importFrom(rlang,is_scalar_character)
importFrom(rlang,is_scalar_integer)
importFrom(rlang,is_scalar_logical)
importFrom(stringr,str_detect)
importFrom(stringr,str_interp)
importFrom(stringr,str_match)
importFrom(stringr,str_remove)
importFrom(stringr,str_sort)
importFrom(stringr,str_split)
importFrom(stringr,str_trim)
importFrom(tidyr,expand_grid)