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@hanwenjuan You may want to check your local git version. I meet the same problem, and it was solved by updating the git to version 2.13.6.
Please also try to remove the parallel in the speedseq/src, and clone a new one using git clone git://git.savannah.gnu.org/parallel.git.
make
cd src/parallel; ./configure --prefix=/disk2/mygeno/hanwj/software/speedseq
/bin/sh: ./configure: No such file or directory
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