DESCRIPTION

Package: iSEEpathways
Title: iSEE extension for panels related to pathway analysis
Version: 1.3.1
Date: 2024-10-01
Authors@R: 
    c(person("Kevin", "Rue-Albrecht", email = "kevinrue67@gmail.com",
             role = c("aut", "cre"),
             comment = c(ORCID = "0000-0003-3899-3872")),
    person("Thomas", "Sandmann", email = "tomsing1@gmail.com",
             role = c("ctb"),
             comment = c(ORCID = "0000-0002-6601-8890")),
    person("Charlotte", "Soneson", role="aut", email="charlottesoneson@gmail.com",
             comment = c(ORCID = '0000-0003-3833-2169')),
    person("Federico", "Marini", role="ctb", email="marinif@uni-mainz.de",
             comment = c(ORCID = '0000-0003-3252-7758')),
    person("Denali Therapeutics", role = c("fnd")))
Description: This package contains diverse functionality to extend the usage
    of the iSEE package, including additional classes for the panels or modes
    facilitating the analysis of pathway analysis results.
    This package does not perform pathway analysis. Instead, it provides methods
    to embed precomputed pathway analysis results in a SummarizedExperiment
    object, in a manner that is compatible with interactive visualisation
    in iSEE applications.
License: Artistic-2.0
URL: https://github.com/iSEE/iSEEpathways
BugReports: https://support.bioconductor.org/t/iSEEpathways
biocViews: Software,
    Infrastructure,
    DifferentialExpression,
    GeneExpression, 
    GUI, 
    Visualization,
    Pathways, 
    GeneSetEnrichment,
    GO, 
    ShinyApps
Encoding: UTF-8
Roxygen: list(markdown = TRUE)
RoxygenNote: 7.2.3
Depends:
    iSEE
Imports:
    ggplot2,
    methods,
    S4Vectors,
    shiny,
    shinyWidgets,
    stats,
    SummarizedExperiment
Suggests:
    airway,
    BiocStyle,
    covr,
    edgeR,
    fgsea,
    GO.db,
    iSEEde,
    knitr,
    org.Hs.eg.db,
    RefManageR,
    rmarkdown,
    scater,
    scuttle,
    sessioninfo,
    testthat (>= 3.0.0)
Config/testthat/edition: 3
VignetteBuilder: knitr