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test2.json
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{
"version": "1",
"personal": {
"submitter_name": "Asker Brejnrod",
"submitter_orcid": "https://orcid.org/0000-0002-1327-2051",
"submitter_email": "[email protected]",
"PI_name": "Pieter Dorrestein",
"PI_institution": "UCSD",
"PI_email": "[email protected]"
},
"metabolomics": {
"project": {
"GNPSMassIVE_ID": "MSV000080179",
"MaSSIVE_URL": "https://gnps.ucsd.edu/ProteoSAFe/result.jsp?task=af19e363ff71492bb2ba1a7370f36dd0&view=advanced_view",
"molecular_network": "9bd16822c8d448f59a03e6cc8f017f43"
},
"publications": "29795809"
},
"experimental": {
"sample_preparation": [
{
"medium_details": {
"medium_type": "metagenome",
"metagenomic_environment": "https://bioportal.bioontology.org/ontologies/MEO/?p=classes&conceptid=http%3A%2F%2Fpurl.jp%2Fbio%2F11%2Fmeo%2FMEO_0000393",
"metagenomic_sample_description": "American gut subject"
},
"growth_parameters": {
"growth_phase_OD": "NA"
},
"aeration": {
"aeration_type": "not shaking"
},
"sample_preparation_method": "Metagenome"
}
],
"extraction_methods": [
{
"extracted_material": "complex",
"solvents": [
{
"ratio": 0.9,
"solvent": "http://purl.obolibrary.org/obo/CHEBI_16236"
},
{
"ratio": 0.1,
"solvent": "http://purl.obolibrary.org/obo/CHEBI_15377"
}
],
"extraction_method": "Ethanol extraction"
}
],
"instrumentation_methods": [
{
"instrumentation": {
"instrument": "http://purl.obolibrary.org/obo/MS_1000084"
},
"column": "Reverse Phase",
"mode": "http://purl.obolibrary.org/obo/MS_1000130",
"ionization": {
"ionization_type": "http://purl.obolibrary.org/obo/MS_1000073"
},
"range": "80-2000",
"collision_energy": "3 ",
"buffering": "0.1% formic acid",
"instrumentation_method": "TOF"
}
]
},
"genomes": [
{
"genome_ID": {
"genome_type": "metagenome",
"ENA_NCBI_accession": "SAME1"
},
"BioSample_accession": "SAMe1",
"publications": "29795809",
"genome_label": "test1"
},
{
"genome_ID": {
"genome_type": "metagenome",
"ENA_NCBI_accession": "SAME2"
},
"BioSample_accession": "SAMe2",
"publications": "29795809",
"genome_label": "test2"
}
],
"genome_metabolome_links": [
{
"genome_label": "test1",
"metabolomics_file": "ftp://massive.ucsd.edu/MSV000080179/peak/mzXMLs/10125_P1_RA12_01_49.mzXML",
"sample_preparation_label": "Metagenome",
"extraction_method_label": "Ethanol extraction",
"instrumentation_method_label": "TOF"
},
{
"genome_label": "test2",
"metabolomics_file": "ftp://massive.ucsd.edu/MSV000080179/peak/mzXMLs/10125_P1_RA12_01_29.mzXML",
"sample_preparation_label": "Metagenome",
"extraction_method_label": "Ethanol extraction",
"instrumentation_method_label": "TOF"
}
]
}