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Problem using the new reference CHM13 #80

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sara77777777 opened this issue Jun 5, 2023 · 1 comment
Open

Problem using the new reference CHM13 #80

sara77777777 opened this issue Jun 5, 2023 · 1 comment
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upstream bug The issue is cause dby the bug in upstream package (dependency)

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@sara77777777
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I'm trying to use the reference chm13 to visualize the short arm of chromosome 14, but it gives me this error:

Error in `genome<-`(`*tmp*`, value = "hs1") : 
  Failed to set session genome to 'hs1'

This is my code:

library(Gviz)
ideoTrack <- IdeogramTrack(genome = "hs1", chromosome = "chr14")
plotTracks(ideoTrack, from = 1, to = 11400261)

Could you please help me?

@ivanek
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ivanek commented Jun 7, 2023

HI @sara77777777,

It is related to rtracklayer bug: lawremi/rtracklayer#84 It needs to be fixed there.

@ivanek ivanek self-assigned this Jun 7, 2023
@ivanek ivanek added the upstream bug The issue is cause dby the bug in upstream package (dependency) label Oct 4, 2023
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upstream bug The issue is cause dby the bug in upstream package (dependency)
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