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example_runs.txt
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TfoX|DNA transformation protein (4x)
start TfoX /nv/hp10/jstern7/scratch/STORI3_runfiles gammaproteobacteria 4 10
hemagglutinin|quorum (4x)
start HapR /nv/hp10/jstern7/scratch/STORI3_runfiles gammaproteobacteria 4 50
ComE (4x)
start ComEA /nv/hp10/jstern7/scratch/STORI3_runfiles gammaproteobacteria 4 10
CytR (4x)
start CytR /nv/hp10/jstern7/scratch/STORI3_runfiles gammaproteobacteria 4 10
PilA (4x)
start PilA /nv/hp10/jstern7/scratch/STORI3_runfiles gammaproteobacteria 4 10
chitinase (4x)
start chitinase /nv/hp10/jstern7/scratch/STORI3_runfiles gammaproteobacteria 4 10
cAMP (4x)
start cAMP /nv/hp10/jstern7/scratch/STORI3_runfiles gammaproteobacteria 4 50
tRNA\s[sS]ynthetase
start all_tRNAsynthetase_bact_1x_STORI2 /nv/hp10/jstern7/scratch/STORI2_runfiles bacteria 4 50
tRNA\s[sS]ynthetase
start all_tRNAsynthetase_euk_1x_STORI2 /nv/hp10/jstern7/scratch/STORI2_runfiles eukaryota 4 50
[hH]emoglobin
start hemoglobin_eumetazoa_1x_STORI2 /nv/hp10/jstern7/scratch/STORI2_runfiles eumetazoa 4 20
[hH]emoglobin
start hemoglobin_b_eumetazoa_1x_STORI2 /nv/hp10/jstern7/scratch/STORI2_runfiles eumetazoa 4 20
DNA.+methyltransferase (8x)
start DNA_methyltransferase /nv/hp10/jstern7/scratch/STORI2_runfiles euk107 4 50
kinase
start euk_kinases /nv/hp10/jstern7/scratch/STORI2_runfiles euk107 4 100
catenin
start euk_catenins /nv/hp10/jstern7/scratch/STORI2_runfiles euk107 4 60
catenin
start euk_catenins_8x /nv/hp10/jstern7/scratch/STORI2_runfiles euk107 4 60
[rR]ibosomal\s[pP]rotein\s[lLsS]\d+(\s|\/|[a-z]|[A-Z]) (1x)
start all_rProt_bact /nv/hp10/jstern7/scratch/STORI2_runfiles bacteria 4 80
[rR]ibosomal\s[pP]rotein\s[lLsS]\d+(\s|\/|[a-z]|[A-Z]) (1x)
start all_rProt_arch /nv/hp10/jstern7/scratch/STORI2_runfiles archaea 4 80
[hH]emoglobin (8x)
start hemoglobin_euk_8x_STORI2 /nv/hp10/jstern7/scratch/STORI2_runfiles eukaryota 4 20
.+ (1x)
start all_bact /nv/hp10/jstern7/scratch/STORI2_runfiles bacteria 4 1000
[eE]longation\s[Ff]actor\s[tT]u
start eftu /nv/hp10/jstern7/scratch/STORI3_runfiles archaea 4 10