MovieMaker2.ipynb

{
 "cells": [
  {
   "cell_type": "code",
   "execution_count": 21,
   "id": "352bb896",
   "metadata": {},
   "outputs": [],
   "source": [
    "import time\n",
    "import os\n",
    "import math\n",
    "import numpy as np\n",
    "import pandas as pd\n",
    "import pyautogui as pa\n",
    "import shutil\n",
    "import imageio\n",
    "from PIL import Image, ImageDraw\n",
    "import random\n",
    "\n",
    "from lib.auto_GUI.auto_GUI_base import AutoGUIBase\n",
    "from lib.auto_GUI.auto_DAT import AutoDAT\n",
    "from lib.auto_GUI.auto_PhotoZ import AutoPhotoZ\n",
    "from lib.analysis.laminar_dist import *\n",
    "from lib.file.TIF import *\n",
    "from lib.analysis.align import ImageAlign\n",
    "from lib.utilities import *\n",
    "from lib.file.ROI_writer import ROIFileWriter\n",
    "\n",
    "###########################################\n",
    "# Make a series of 1-frame measure windows from PhotoZ into a movie\n",
    "# Asks user to annotate DIC/Fluorescence images for electrode + layer and barrel boundaries\n",
    "#       Puts this metadata into ROI .dat files\n",
    "# Uses DIC-to-ZDA frame mapping (rotation and scaling) to annotate the PhotoZ frames\n",
    "# Uses autoPhotoZ to take frame images for move\n",
    "#  - 8/24/23: \n",
    "#        Support any number of barrels.\n",
    "#        add ROI generation: layer/barrel ROIs\n",
    "###########################################"
   ]
  },
  {
   "cell_type": "code",
   "execution_count": 22,
   "id": "70587cb5",
   "metadata": {
    "scrolled": true
   },
   "outputs": [],
   "source": [
    "# Load data, not from Drive for Desktop since PhotoZ complains about loading zda from Drive\n",
    "data_dir = \"C:/Users/jjudge3/Desktop/Data/mm_full_pipeline_targets/Anna-NBQX/\"\n",
    "start_frame = 94\n",
    "movie_length = 200  # frames\n",
    "frame_step_size = 4\n",
    "camera_program = 4\n",
    "which_rig = 'new'  # change to 'old' for old rig dic alignment\n",
    "date_format = 'yy-mm-dd'\n",
    "if which_rig == 'old':\n",
    "    date_format = 'yyyy-mm-dd'\n",
    "\n",
    "# annotation settings\n",
    "skip_draw_annotations = True  # If True, don't draw any new annotations\n",
    "disable_annotations = True  # If True, don't draw any annotations\n",
    "\n",
    "# Movie maker settings\n",
    "disable_photoZ_interact = False\n",
    "initialize_photoZ = False\n",
    "clean_scratch_files = False  # clean up SNR maps\n",
    "replace_existing_frame_pngs = False\n",
    "disable_google_drive_interact = True\n",
    "image_border_width = 8\n",
    "image_scaling = 7  # pixels of image per array diode pixel\n",
    "electrode_marker_radius = 4"
   ]
  },
  {
   "cell_type": "code",
   "execution_count": 23,
   "id": "4d280d0f",
   "metadata": {},
   "outputs": [],
   "source": [
    "# set up PhotoZ (open it manually)\n",
    "aPhz = AutoPhotoZ(data_dir=data_dir)\n",
    "if initialize_photoZ and not disable_photoZ_interact:\n",
    "    aPhz.prepare_photoZ()\n",
    "if not disable_photoZ_interact:\n",
    "    pa.alert(\"Please disable trace overlay & normalization, and maximize PhotoZ before continuing.\")"
   ]
  },
  {
   "cell_type": "code",
   "execution_count": 24,
   "id": "ed5ee087",
   "metadata": {},
   "outputs": [],
   "source": [
    "# run this cell to refresh and re-do all processing.\n",
    "rec_id_skip_list = []"
   ]
  },
  {
   "cell_type": "code",
   "execution_count": 25,
   "id": "d6ae11c2",
   "metadata": {},
   "outputs": [],
   "source": [
    "# First ask user to annotate some images with Electrode loc and L4 boundaries and layer text placement\n",
    "# based on DIC-to-ZDA_Alignment script\n",
    "for subdir, dirs, files in os.walk(data_dir):\n",
    "    if disable_annotations:\n",
    "        continue\n",
    "    if 'notUsable' in subdir:\n",
    "        continue\n",
    "    if 'hidden' in subdir:\n",
    "        continue\n",
    "    if 'dic' in dirs and 'selected_zda' in dirs:\n",
    "        print(\"\\n\", subdir)\n",
    "        dic_dir = subdir + \"/dic/\"\n",
    "        selected_zda_dir = subdir + \"/selected_zda/\"\n",
    "        already_drawn_slic_loc = {}\n",
    "        \n",
    "        # optionally process date\n",
    "        date = \"\"\n",
    "        try:\n",
    "            char_select = -len(date_format)\n",
    "            date = subdir.split(\"_Usable\")[0][char_select:]\n",
    "            date = [int(x) for x in date.split(\"-\")]\n",
    "            if date_format != 'yyyy-mm-dd':\n",
    "                date[2] += 2000  # full year format\n",
    "            else:\n",
    "                date = [date[1], date[2], date[0]]\n",
    "            date = \"/\".join([str(d) for d in date])\n",
    "        except Exception as e:\n",
    "            print(e, \"could not process date.\")\n",
    "\n",
    "        # take selected zda and expand into separate subdir for each zda file\n",
    "        for zda_file in os.listdir(selected_zda_dir):\n",
    "            if zda_file.endswith('.zda'):\n",
    "                rec_id = zda_file.split('.')[0]\n",
    "                if subdir+rec_id in rec_id_skip_list:\n",
    "                    continue\n",
    "                print(\"\\n\", subdir)\n",
    "                slic_id, loc_id, _ = [int(x) for x in rec_id.split(\"_\")]\n",
    "                # output dir\n",
    "                output_dir = selected_zda_dir + \"/analysis\" + rec_id + \"/\"\n",
    "                try:\n",
    "                    os.makedirs(output_dir)\n",
    "                except Exception as e:\n",
    "                    pass\n",
    "\n",
    "                # read in 8-bit single TIF images to array, apply same cropping/binning\n",
    "                image_data = {}\n",
    "                cam_settings = CameraSettings().get_program_settings(camera_program)\n",
    "                binning = int(2048 / 400) # if want size similar to RLI\n",
    "                TIFLoader(dic_dir, \n",
    "                          cam_settings, \n",
    "                          binning, \n",
    "                          crop=False, \n",
    "                          flip_horiz=True).load_files(image_data, \n",
    "                                                      slice_target=slic_id)\n",
    "\n",
    "                # align RLI and DIC and record the RLI's image boundaries within the DIC image.\n",
    "                img_aligner = ImageAlign(rig=which_rig)\n",
    "\n",
    "                for slic in image_data:\n",
    "                    for loc in image_data[slic]:\n",
    "                        if slic != slic_id or loc != loc_id:\n",
    "                            continue\n",
    "                        print(slic, loc)\n",
    "\n",
    "                        # if already drawn, no need to ask user again\n",
    "                        if str(slic_id)+\"_\"+str(loc_id) in already_drawn_slic_loc:\n",
    "                            # just copy them over\n",
    "                            src_dir = already_drawn_slic_loc[str(slic_id)+\"_\"+str(loc_id)]\n",
    "                            electrode_file = src_dir + \"electrode.dat\"\n",
    "                            corners_layer_file = src_dir + \"corners_layer.dat\"\n",
    "                            corners_barrel_file = src_dir + \"corners_barrel.dat\"\n",
    "                            shutil.copy(electrode_file, output_dir + \"electrode.dat\")\n",
    "                            shutil.copy(corners_layer_file, output_dir + \"corners_layer.dat\")\n",
    "                            shutil.copy(corners_barrel_file, output_dir + \"corners_barrel.dat\")\n",
    "                            print(\"Copied previous annotations over.\")\n",
    "                            continue\n",
    "\n",
    "                        # DICs\n",
    "                        fluor = None\n",
    "                        if 'f' in image_data[slic][loc]:\n",
    "                            fluor = image_data[slic][loc]['f']\n",
    "                        elif 'fe' in image_data[slic][loc]:\n",
    "                            fluor = image_data[slic][loc]['fe']\n",
    "                        # img = image_data[slic][loc]['i']\n",
    "\n",
    "                        dic_electrode = None\n",
    "                        if 'e' in image_data[slic][loc]:\n",
    "                            dic_electrode = image_data[slic][loc]['e']\n",
    "                        else:\n",
    "                            dic_electrode = fluor\n",
    "                            \n",
    "                        if which_rig != 'new':\n",
    "                            fluor = dic_electrode\n",
    "\n",
    "                        dic_electrode = np.array(dic_electrode, dtype=np.uint8)\n",
    "                        orig_arr_shape = dic_electrode.shape\n",
    "\n",
    "                        # ask user to select site of stim and layer/barrel borders\n",
    "                        electrode_file = output_dir + \"electrode.dat\"\n",
    "                        corners_layer_file = output_dir + \"corners_layer.dat\"\n",
    "                        corners_barrel_file = output_dir + \"corners_barrel.dat\"\n",
    "                        if not skip_draw_annotations:\n",
    "                            dic_electrode, coords_electrode, dic_layers, coords_layers = \\\n",
    "                                img_aligner.draw_on_images_wrapper(\n",
    "                                    dic_electrode, \n",
    "                                    fluor, \n",
    "                                    date + \" \" + rec_id + \" \")\n",
    "                            dic_electrode = np.array(dic_electrode)\n",
    "                            dic_layers = np.array(dic_layers)\n",
    "                            \n",
    "                            plt.imshow(dic_electrode, cmap='gray')\n",
    "                            x_el, y_el = coords_electrode['electrode']\n",
    "                            plt.plot(x_el, y_el, marker=\"*\", color='red')\n",
    "                            dcs = []\n",
    "                            if which_rig != 'new':  # show the portion of frame which is PhotoZ\n",
    "                                photoZ_frame_coords = img_aligner.dic_coordinates\n",
    "                                for dc_c in photoZ_frame_coords:\n",
    "                                    x_c = dc_c[0] * dic_electrode.shape[1]\n",
    "                                    y_c = dc_c[1] * dic_electrode.shape[0]\n",
    "                                    dcs.append([x_c, y_c])\n",
    "                                print(dcs)\n",
    "                                for ic, jc in [[0,1],[1,3],[3,2],[2,0]]:\n",
    "                                    plt.plot([dcs[ic][0], dcs[jc][0]], [dcs[ic][1], dcs[jc][1]], \n",
    "                                             color=\"white\", \n",
    "                                             linewidth=3)\n",
    "                            plt.show()\n",
    "\n",
    "                            plt.imshow(dic_layers, cmap='gray')\n",
    "                            for key_pt in coords_layers:\n",
    "                                if \"_axis\" in key_pt:\n",
    "                                    for pt in coords_layers[key_pt]:\n",
    "                                        x, y = pt\n",
    "                                        plt.plot(x, y, marker=\"*\", color='green')\n",
    "                            if which_rig != 'new':  # show the portion of frame which is PhotoZ\n",
    "                                photoZ_frame_coords = img_aligner.dic_coordinates\n",
    "                                for ic, jc in [[0,1],[1,3],[3,2],[2,0]]:\n",
    "                                    plt.plot([dcs[ic][0], dcs[jc][0]], [dcs[ic][1], dcs[jc][1]], \n",
    "                                             color=\"white\", \n",
    "                                             linewidth=3)\n",
    "                            plt.show()\n",
    "\n",
    "                            try:\n",
    "                                os.makedirs(output_dir)\n",
    "                            except OSError:\n",
    "                                pass\n",
    "\n",
    "                            # transform coordinates -- Actual alignment work done here\n",
    "                            print(\"\\n \\tcoords_electrode\", coords_electrode)\n",
    "                            print(\"\\tcoords_layers\", coords_layers)\n",
    "                            coords_electrode = img_aligner.transform_from_dic_coordinates(coords_electrode, orig_arr_shape)\n",
    "                            coords_layers = img_aligner.transform_from_dic_coordinates(coords_layers, orig_arr_shape)\n",
    "                            coordinates = coords_electrode | coords_layers\n",
    "\n",
    "                            # write electrode and corners to file\n",
    "                            img_aligner.write_shapes_to_files(coordinates,\n",
    "                                                              electrode_file,\n",
    "                                                              corners_layer_file,\n",
    "                                                              corners_barrel_file,\n",
    "                                                              preserve_initial_order=True)\n",
    "                            print(\"Wrote files to\", output_dir)\n",
    "\n",
    "                        ############################################\n",
    "                        # Create ROIs for each layer/barrel division\n",
    "                        ############################################\n",
    "                        # read barrel and layer axes data back in\n",
    "                        # create collections of pixels by LAYER so we can create separate files for each LAYER'S barrels\n",
    "                        barrel_layer_axes = []  # going to be a list of Line objects, first 2 are layer boundaries, rest are barrel boundaries\n",
    "                        for la_file in [corners_layer_file, corners_barrel_file]:\n",
    "                            with open(la_file, 'r') as f:\n",
    "                                lines = f.readlines() \n",
    "                            roi_px_ct = int(lines[2]) - 1 \n",
    "                            corners = [int(x) for x in lines[4:]] # the last lines are diode numbers of corners\n",
    "                            if len(corners) != roi_px_ct:\n",
    "                                raise Exception(\"Likely an error processing corners. Expected \" + \n",
    "                                                str(roi_px_ct) + \" pixels.\")\n",
    "                            layer_axes = LayerAxes(corners[:4], verbose=False, obey_initial_order=True)\n",
    "                            laminar_axis, laminar_axis_2 = layer_axes.get_layer_axes()\n",
    "                            barrel_layer_axes.append(laminar_axis)\n",
    "                            barrel_layer_axes.append(laminar_axis_2)\n",
    "\n",
    "                            rest_of_corners = LaminarROI(corners[4:]).get_points()\n",
    "                            for j in range(0, len(rest_of_corners), 2):\n",
    "                                if len(rest_of_corners) > j+1:\n",
    "                                    barrel_layer_axes.append(Line(rest_of_corners[j], rest_of_corners[j+1]))\n",
    "\n",
    "                        # Now we will divide into L2/3, L4, L5 and barrels\n",
    "                        w, h = LaminarROI([]).get_dimensions()\n",
    "                        \n",
    "                        # first two are guaranteed to be LAYER divisions\n",
    "                        layer_4_list = {}\n",
    "                        layer_axis_1 = barrel_layer_axes[0]\n",
    "                        layer_axis_2 = barrel_layer_axes[1]\n",
    "                        px_map_1 = layer_axis_1.get_split_px_map() \n",
    "                        px_map_2 = layer_axis_2.get_split_px_map()\n",
    "                        px_map = px_map_1 + px_map_2 * 2\n",
    "                        layer_4_px_map = np.logical_xor(px_map_1, px_map_2)\n",
    "                        \n",
    "                        # find the number of connected domains in layer_4_px_map\n",
    "                        if not Line.has_one_connected_domain(layer_4_px_map):\n",
    "                            print(\"Flipping L4 map!\")\n",
    "                            layer_4_px_map = np.ones(layer_4_px_map.shape) - layer_4_px_map\n",
    "                        \n",
    "                        # convert layer 4 px map to list format\n",
    "                        for i in range(w):\n",
    "                            for j in range(h):\n",
    "                                if layer_4_px_map[i,j] > 0:\n",
    "                                    layer_4_list[str(i) + \"_\" + str(j)] = [i, j]\n",
    "\n",
    "                        n_unique_rois = np.unique(px_map)  # should match the number of ROIs expected, which is 3 so far\n",
    "                        print(\"PX_MAP should be divided into 3 layers at this point. \" +\n",
    "                                            \"Number of unique layers found: \" + str(len(n_unique_rois)) )\n",
    "                        \n",
    "                        # Now divide into ROIs\n",
    "                        incrementer = 4\n",
    "                        for axis in barrel_layer_axes[2:]: # rest of these are barrel divisions\n",
    "                            for i in range(w):\n",
    "                                for j in range(h):\n",
    "                                    if axis.is_point_left_of_line([i, j]):\n",
    "                                        px_map[i, j] += incrementer\n",
    "                            incrementer *= 2\n",
    "                            \n",
    "                        n_unique_rois = np.unique(px_map)  # should match the number of ROIs expected\n",
    "                        roi_id_map = {}\n",
    "                        roi_layer_4_map = {}\n",
    "                        layer4_idxs = {}\n",
    "                        for i in range(len(n_unique_rois)):\n",
    "                            roi_id_map[n_unique_rois[i]] = i\n",
    "\n",
    "                        plt.clf()\n",
    "                        plt.imshow(np.transpose(px_map))\n",
    "                        for axis in barrel_layer_axes:\n",
    "                            p1, p2 = axis.get_line_repr()\n",
    "                            plt.plot([p1[0], p2[0]], [p1[1], p2[1]], 'ro', linestyle=\"--\")\n",
    "                            plt.plot(p1[0], p1[1], marker=\"*\", color='green')\n",
    "                            plt.plot(p2[0], p2[1], marker=\"*\", color='blue')\n",
    "                        for k in layer_4_list:\n",
    "                            if random.random() > 0.95:\n",
    "                                l4_pt = layer_4_list[k]\n",
    "                                plt.plot(l4_pt[0], l4_pt[1], marker=\".\", color='red', alpha=0.3)\n",
    "                        plt.show()\n",
    "\n",
    "                        # Then we will take this Pixel classification map and turn into ROIs\n",
    "                        roi_list = [[] for _ in range(len(n_unique_rois))]  # doubly-nested list of regions\n",
    "                        roi_writer = ROIFileWriter()\n",
    "                        roi_creater = ROICreator(None)\n",
    "                        roi_output_file = selected_zda_dir + \"layers_barrels_slice\" + str(slic) + \"_\" + str(loc) +\"_rois.dat\"\n",
    "                        for i in range(w):\n",
    "                            for j in range(h):\n",
    "                                roi_idx = roi_id_map[px_map[i, j]]\n",
    "                                dn = roi_creater.convert_point_to_diode_number([i, j])\n",
    "                                roi_list[roi_idx].append(dn)\n",
    "                        roi_writer.write_regions_to_dat(roi_output_file, roi_list)\n",
    "                        \n",
    "                        # now write a separate file with only layer 4 rois\n",
    "                        l4_roi_list = [[] for _ in range(len(n_unique_rois))]\n",
    "                        l4_roi_output_file = selected_zda_dir + \"layer4_barrels_slice\" + str(slic)  + \"_\" + str(loc) +\"_rois.dat\"\n",
    "                        for i in range(w):\n",
    "                            for j in range(h):\n",
    "                                if str(i) + \"_\" + str(j) in layer_4_list:\n",
    "                                    roi_idx = roi_id_map[px_map[i, j]]\n",
    "                                    dn = roi_creater.convert_point_to_diode_number([i, j])\n",
    "                                    l4_roi_list[roi_idx].append(dn)\n",
    "                        # filter empty ROIs\n",
    "                        l4_roi_list = [r for r in l4_roi_list if len(r) > 0]\n",
    "                        roi_writer.write_regions_to_dat(l4_roi_output_file, l4_roi_list)\n",
    "\n",
    "                        # mark this slice/loc already drawn \n",
    "                        already_drawn_slic_loc[str(slic_id)+\"_\"+str(loc_id)] = output_dir\n",
    "                image_data.clear()\n",
    "                rec_id_skip_list.append(subdir+rec_id)"
   ]
  },
  {
   "cell_type": "code",
   "execution_count": 26,
   "id": "afad75fa",
   "metadata": {},
   "outputs": [
    {
     "name": "stdout",
     "output_type": "stream",
     "text": [
      "C:/Users/jjudge3/Desktop/Data/mm_full_pipeline_targets/Anna-NBQX/07-15-24\n",
      "02_01_01\n",
      "\n",
      "\n",
      "Opening 02_01_01.zda\n",
      "Saved intermed_snr_df file: C:/Users/jjudge3/Desktop/Data/mm_full_pipeline_targets/Anna-NBQX/07-15-24/selected_zda//Data.dat\n",
      "Moved color upper bound from 1.0 to 44.86\n",
      "File created: C:/Users/jjudge3/Desktop/Data/mm_full_pipeline_targets/Anna-NBQX/07-15-24/selected_zda//analysis02_01_01/130.jpg\n",
      "File created: C:/Users/jjudge3/Desktop/Data/mm_full_pipeline_targets/Anna-NBQX/07-15-24/selected_zda//analysis02_01_01/134.jpg\n",
      "File created: C:/Users/jjudge3/Desktop/Data/mm_full_pipeline_targets/Anna-NBQX/07-15-24/selected_zda//analysis02_01_01/138.jpg\n",
      "File created: C:/Users/jjudge3/Desktop/Data/mm_full_pipeline_targets/Anna-NBQX/07-15-24/selected_zda//analysis02_01_01/142.jpg\n",
      "File created: C:/Users/jjudge3/Desktop/Data/mm_full_pipeline_targets/Anna-NBQX/07-15-24/selected_zda//analysis02_01_01/146.jpg\n",
      "File created: C:/Users/jjudge3/Desktop/Data/mm_full_pipeline_targets/Anna-NBQX/07-15-24/selected_zda//analysis02_01_01/150.jpg\n",
      "File created: C:/Users/jjudge3/Desktop/Data/mm_full_pipeline_targets/Anna-NBQX/07-15-24/selected_zda//analysis02_01_01/154.jpg\n",
      "File created: C:/Users/jjudge3/Desktop/Data/mm_full_pipeline_targets/Anna-NBQX/07-15-24/selected_zda//analysis02_01_01/158.jpg\n",
      "File created: C:/Users/jjudge3/Desktop/Data/mm_full_pipeline_targets/Anna-NBQX/07-15-24/selected_zda//analysis02_01_01/162.jpg\n",
      "File created: C:/Users/jjudge3/Desktop/Data/mm_full_pipeline_targets/Anna-NBQX/07-15-24/selected_zda//analysis02_01_01/166.jpg\n",
      "File created: C:/Users/jjudge3/Desktop/Data/mm_full_pipeline_targets/Anna-NBQX/07-15-24/selected_zda//analysis02_01_01/170.jpg\n",
      "File created: C:/Users/jjudge3/Desktop/Data/mm_full_pipeline_targets/Anna-NBQX/07-15-24/selected_zda//analysis02_01_01/174.jpg\n",
      "File created: C:/Users/jjudge3/Desktop/Data/mm_full_pipeline_targets/Anna-NBQX/07-15-24/selected_zda//analysis02_01_01/178.jpg\n",
      "File created: C:/Users/jjudge3/Desktop/Data/mm_full_pipeline_targets/Anna-NBQX/07-15-24/selected_zda//analysis02_01_01/182.jpg\n",
      "File created: C:/Users/jjudge3/Desktop/Data/mm_full_pipeline_targets/Anna-NBQX/07-15-24/selected_zda//analysis02_01_01/186.jpg\n",
      "File created: C:/Users/jjudge3/Desktop/Data/mm_full_pipeline_targets/Anna-NBQX/07-15-24/selected_zda//analysis02_01_01/190.jpg\n",
      "File created: C:/Users/jjudge3/Desktop/Data/mm_full_pipeline_targets/Anna-NBQX/07-15-24/selected_zda//analysis02_01_01/194.jpg\n",
      "File created: C:/Users/jjudge3/Desktop/Data/mm_full_pipeline_targets/Anna-NBQX/07-15-24/selected_zda//analysis02_01_01/198.jpg\n",
      "File created: C:/Users/jjudge3/Desktop/Data/mm_full_pipeline_targets/Anna-NBQX/07-15-24/selected_zda//analysis02_01_01/202.jpg\n",
      "File created: C:/Users/jjudge3/Desktop/Data/mm_full_pipeline_targets/Anna-NBQX/07-15-24/selected_zda//analysis02_01_01/206.jpg\n",
      "File created: C:/Users/jjudge3/Desktop/Data/mm_full_pipeline_targets/Anna-NBQX/07-15-24/selected_zda//analysis02_01_01/210.jpg\n",
      "File created: C:/Users/jjudge3/Desktop/Data/mm_full_pipeline_targets/Anna-NBQX/07-15-24/selected_zda//analysis02_01_01/214.jpg\n",
      "File created: C:/Users/jjudge3/Desktop/Data/mm_full_pipeline_targets/Anna-NBQX/07-15-24/selected_zda//analysis02_01_01/218.jpg\n",
      "File created: C:/Users/jjudge3/Desktop/Data/mm_full_pipeline_targets/Anna-NBQX/07-15-24/selected_zda//analysis02_01_01/222.jpg\n",
      "File created: C:/Users/jjudge3/Desktop/Data/mm_full_pipeline_targets/Anna-NBQX/07-15-24/selected_zda//analysis02_01_01/226.jpg\n",
      "File created: C:/Users/jjudge3/Desktop/Data/mm_full_pipeline_targets/Anna-NBQX/07-15-24/selected_zda//analysis02_01_01/230.jpg\n",
      "File created: C:/Users/jjudge3/Desktop/Data/mm_full_pipeline_targets/Anna-NBQX/07-15-24/selected_zda//analysis02_01_01/234.jpg\n",
      "File created: C:/Users/jjudge3/Desktop/Data/mm_full_pipeline_targets/Anna-NBQX/07-15-24/selected_zda//analysis02_01_01/238.jpg\n",
      "File created: C:/Users/jjudge3/Desktop/Data/mm_full_pipeline_targets/Anna-NBQX/07-15-24/selected_zda//analysis02_01_01/242.jpg\n",
      "File created: C:/Users/jjudge3/Desktop/Data/mm_full_pipeline_targets/Anna-NBQX/07-15-24/selected_zda//analysis02_01_01/246.jpg\n",
      "File created: C:/Users/jjudge3/Desktop/Data/mm_full_pipeline_targets/Anna-NBQX/07-15-24/selected_zda//analysis02_01_01/250.jpg\n",
      "File created: C:/Users/jjudge3/Desktop/Data/mm_full_pipeline_targets/Anna-NBQX/07-15-24/selected_zda//analysis02_01_01/254.jpg\n",
      "File created: C:/Users/jjudge3/Desktop/Data/mm_full_pipeline_targets/Anna-NBQX/07-15-24/selected_zda//analysis02_01_01/258.jpg\n",
      "File created: C:/Users/jjudge3/Desktop/Data/mm_full_pipeline_targets/Anna-NBQX/07-15-24/selected_zda//analysis02_01_01/262.jpg\n",
      "File created: C:/Users/jjudge3/Desktop/Data/mm_full_pipeline_targets/Anna-NBQX/07-15-24/selected_zda//analysis02_01_01/266.jpg\n",
      "File created: C:/Users/jjudge3/Desktop/Data/mm_full_pipeline_targets/Anna-NBQX/07-15-24/selected_zda//analysis02_01_01/270.jpg\n",
      "File created: C:/Users/jjudge3/Desktop/Data/mm_full_pipeline_targets/Anna-NBQX/07-15-24/selected_zda//analysis02_01_01/274.jpg\n",
      "File created: C:/Users/jjudge3/Desktop/Data/mm_full_pipeline_targets/Anna-NBQX/07-15-24/selected_zda//analysis02_01_01/278.jpg\n",
      "File created: C:/Users/jjudge3/Desktop/Data/mm_full_pipeline_targets/Anna-NBQX/07-15-24/selected_zda//analysis02_01_01/282.jpg\n",
      "File created: C:/Users/jjudge3/Desktop/Data/mm_full_pipeline_targets/Anna-NBQX/07-15-24/selected_zda//analysis02_01_01/286.jpg\n",
      "File created: C:/Users/jjudge3/Desktop/Data/mm_full_pipeline_targets/Anna-NBQX/07-15-24/selected_zda//analysis02_01_01/290.jpg\n",
      "CREATED MOVIE: 02_01_01movie.gif\n",
      "02_01_02\n",
      "\n",
      "\n",
      "Opening 02_01_02.zda\n",
      "Saved intermed_snr_df file: C:/Users/jjudge3/Desktop/Data/mm_full_pipeline_targets/Anna-NBQX/07-15-24/selected_zda//Data.dat\n",
      "Moved color upper bound from 44.86 to 50.27\n",
      "File created: C:/Users/jjudge3/Desktop/Data/mm_full_pipeline_targets/Anna-NBQX/07-15-24/selected_zda//analysis02_01_02/130.jpg\n",
      "File created: C:/Users/jjudge3/Desktop/Data/mm_full_pipeline_targets/Anna-NBQX/07-15-24/selected_zda//analysis02_01_02/134.jpg\n",
      "File created: C:/Users/jjudge3/Desktop/Data/mm_full_pipeline_targets/Anna-NBQX/07-15-24/selected_zda//analysis02_01_02/138.jpg\n",
      "File created: C:/Users/jjudge3/Desktop/Data/mm_full_pipeline_targets/Anna-NBQX/07-15-24/selected_zda//analysis02_01_02/142.jpg\n",
      "File created: C:/Users/jjudge3/Desktop/Data/mm_full_pipeline_targets/Anna-NBQX/07-15-24/selected_zda//analysis02_01_02/146.jpg\n",
      "File created: C:/Users/jjudge3/Desktop/Data/mm_full_pipeline_targets/Anna-NBQX/07-15-24/selected_zda//analysis02_01_02/150.jpg\n",
      "File created: C:/Users/jjudge3/Desktop/Data/mm_full_pipeline_targets/Anna-NBQX/07-15-24/selected_zda//analysis02_01_02/154.jpg\n",
      "File created: C:/Users/jjudge3/Desktop/Data/mm_full_pipeline_targets/Anna-NBQX/07-15-24/selected_zda//analysis02_01_02/158.jpg\n",
      "File created: C:/Users/jjudge3/Desktop/Data/mm_full_pipeline_targets/Anna-NBQX/07-15-24/selected_zda//analysis02_01_02/162.jpg\n",
      "File created: C:/Users/jjudge3/Desktop/Data/mm_full_pipeline_targets/Anna-NBQX/07-15-24/selected_zda//analysis02_01_02/166.jpg\n",
      "File created: C:/Users/jjudge3/Desktop/Data/mm_full_pipeline_targets/Anna-NBQX/07-15-24/selected_zda//analysis02_01_02/170.jpg\n",
      "File created: C:/Users/jjudge3/Desktop/Data/mm_full_pipeline_targets/Anna-NBQX/07-15-24/selected_zda//analysis02_01_02/174.jpg\n",
      "File created: C:/Users/jjudge3/Desktop/Data/mm_full_pipeline_targets/Anna-NBQX/07-15-24/selected_zda//analysis02_01_02/178.jpg\n",
      "File created: C:/Users/jjudge3/Desktop/Data/mm_full_pipeline_targets/Anna-NBQX/07-15-24/selected_zda//analysis02_01_02/182.jpg\n",
      "File created: C:/Users/jjudge3/Desktop/Data/mm_full_pipeline_targets/Anna-NBQX/07-15-24/selected_zda//analysis02_01_02/186.jpg\n",
      "File created: C:/Users/jjudge3/Desktop/Data/mm_full_pipeline_targets/Anna-NBQX/07-15-24/selected_zda//analysis02_01_02/190.jpg\n",
      "File created: C:/Users/jjudge3/Desktop/Data/mm_full_pipeline_targets/Anna-NBQX/07-15-24/selected_zda//analysis02_01_02/194.jpg\n",
      "File created: C:/Users/jjudge3/Desktop/Data/mm_full_pipeline_targets/Anna-NBQX/07-15-24/selected_zda//analysis02_01_02/198.jpg\n",
      "File created: C:/Users/jjudge3/Desktop/Data/mm_full_pipeline_targets/Anna-NBQX/07-15-24/selected_zda//analysis02_01_02/202.jpg\n",
      "File created: C:/Users/jjudge3/Desktop/Data/mm_full_pipeline_targets/Anna-NBQX/07-15-24/selected_zda//analysis02_01_02/206.jpg\n",
      "File created: C:/Users/jjudge3/Desktop/Data/mm_full_pipeline_targets/Anna-NBQX/07-15-24/selected_zda//analysis02_01_02/210.jpg\n",
      "File created: C:/Users/jjudge3/Desktop/Data/mm_full_pipeline_targets/Anna-NBQX/07-15-24/selected_zda//analysis02_01_02/214.jpg\n",
      "File created: C:/Users/jjudge3/Desktop/Data/mm_full_pipeline_targets/Anna-NBQX/07-15-24/selected_zda//analysis02_01_02/218.jpg\n",
      "File created: C:/Users/jjudge3/Desktop/Data/mm_full_pipeline_targets/Anna-NBQX/07-15-24/selected_zda//analysis02_01_02/222.jpg\n",
      "File created: C:/Users/jjudge3/Desktop/Data/mm_full_pipeline_targets/Anna-NBQX/07-15-24/selected_zda//analysis02_01_02/226.jpg\n",
      "File created: C:/Users/jjudge3/Desktop/Data/mm_full_pipeline_targets/Anna-NBQX/07-15-24/selected_zda//analysis02_01_02/230.jpg\n",
      "File created: C:/Users/jjudge3/Desktop/Data/mm_full_pipeline_targets/Anna-NBQX/07-15-24/selected_zda//analysis02_01_02/234.jpg\n",
      "File created: C:/Users/jjudge3/Desktop/Data/mm_full_pipeline_targets/Anna-NBQX/07-15-24/selected_zda//analysis02_01_02/238.jpg\n",
      "File created: C:/Users/jjudge3/Desktop/Data/mm_full_pipeline_targets/Anna-NBQX/07-15-24/selected_zda//analysis02_01_02/242.jpg\n",
      "File created: C:/Users/jjudge3/Desktop/Data/mm_full_pipeline_targets/Anna-NBQX/07-15-24/selected_zda//analysis02_01_02/246.jpg\n",
      "File created: C:/Users/jjudge3/Desktop/Data/mm_full_pipeline_targets/Anna-NBQX/07-15-24/selected_zda//analysis02_01_02/250.jpg\n",
      "File created: C:/Users/jjudge3/Desktop/Data/mm_full_pipeline_targets/Anna-NBQX/07-15-24/selected_zda//analysis02_01_02/254.jpg\n",
      "File created: C:/Users/jjudge3/Desktop/Data/mm_full_pipeline_targets/Anna-NBQX/07-15-24/selected_zda//analysis02_01_02/258.jpg\n",
      "File created: C:/Users/jjudge3/Desktop/Data/mm_full_pipeline_targets/Anna-NBQX/07-15-24/selected_zda//analysis02_01_02/262.jpg\n",
      "File created: C:/Users/jjudge3/Desktop/Data/mm_full_pipeline_targets/Anna-NBQX/07-15-24/selected_zda//analysis02_01_02/266.jpg\n",
      "File created: C:/Users/jjudge3/Desktop/Data/mm_full_pipeline_targets/Anna-NBQX/07-15-24/selected_zda//analysis02_01_02/270.jpg\n",
      "File created: C:/Users/jjudge3/Desktop/Data/mm_full_pipeline_targets/Anna-NBQX/07-15-24/selected_zda//analysis02_01_02/274.jpg\n",
      "File created: C:/Users/jjudge3/Desktop/Data/mm_full_pipeline_targets/Anna-NBQX/07-15-24/selected_zda//analysis02_01_02/278.jpg\n",
      "File created: C:/Users/jjudge3/Desktop/Data/mm_full_pipeline_targets/Anna-NBQX/07-15-24/selected_zda//analysis02_01_02/282.jpg\n",
      "File created: C:/Users/jjudge3/Desktop/Data/mm_full_pipeline_targets/Anna-NBQX/07-15-24/selected_zda//analysis02_01_02/286.jpg\n",
      "File created: C:/Users/jjudge3/Desktop/Data/mm_full_pipeline_targets/Anna-NBQX/07-15-24/selected_zda//analysis02_01_02/290.jpg\n",
      "CREATED MOVIE: 02_01_02movie.gif\n",
      "02_01_06\n",
      "\n",
      "\n",
      "Opening 02_01_06.zda\n",
      "Saved intermed_snr_df file: C:/Users/jjudge3/Desktop/Data/mm_full_pipeline_targets/Anna-NBQX/07-15-24/selected_zda//Data.dat\n",
      "Moved color upper bound from 50.27 to 42.83\n",
      "File created: C:/Users/jjudge3/Desktop/Data/mm_full_pipeline_targets/Anna-NBQX/07-15-24/selected_zda//analysis02_01_06/130.jpg\n",
      "File created: C:/Users/jjudge3/Desktop/Data/mm_full_pipeline_targets/Anna-NBQX/07-15-24/selected_zda//analysis02_01_06/134.jpg\n",
      "File created: C:/Users/jjudge3/Desktop/Data/mm_full_pipeline_targets/Anna-NBQX/07-15-24/selected_zda//analysis02_01_06/138.jpg\n",
      "File created: C:/Users/jjudge3/Desktop/Data/mm_full_pipeline_targets/Anna-NBQX/07-15-24/selected_zda//analysis02_01_06/142.jpg\n",
      "File created: C:/Users/jjudge3/Desktop/Data/mm_full_pipeline_targets/Anna-NBQX/07-15-24/selected_zda//analysis02_01_06/146.jpg\n",
      "File created: C:/Users/jjudge3/Desktop/Data/mm_full_pipeline_targets/Anna-NBQX/07-15-24/selected_zda//analysis02_01_06/150.jpg\n",
      "File created: C:/Users/jjudge3/Desktop/Data/mm_full_pipeline_targets/Anna-NBQX/07-15-24/selected_zda//analysis02_01_06/154.jpg\n",
      "File created: C:/Users/jjudge3/Desktop/Data/mm_full_pipeline_targets/Anna-NBQX/07-15-24/selected_zda//analysis02_01_06/158.jpg\n",
      "File created: C:/Users/jjudge3/Desktop/Data/mm_full_pipeline_targets/Anna-NBQX/07-15-24/selected_zda//analysis02_01_06/162.jpg\n",
      "File created: C:/Users/jjudge3/Desktop/Data/mm_full_pipeline_targets/Anna-NBQX/07-15-24/selected_zda//analysis02_01_06/166.jpg\n",
      "File created: C:/Users/jjudge3/Desktop/Data/mm_full_pipeline_targets/Anna-NBQX/07-15-24/selected_zda//analysis02_01_06/170.jpg\n",
      "File created: C:/Users/jjudge3/Desktop/Data/mm_full_pipeline_targets/Anna-NBQX/07-15-24/selected_zda//analysis02_01_06/174.jpg\n",
      "File created: C:/Users/jjudge3/Desktop/Data/mm_full_pipeline_targets/Anna-NBQX/07-15-24/selected_zda//analysis02_01_06/178.jpg\n",
      "File created: C:/Users/jjudge3/Desktop/Data/mm_full_pipeline_targets/Anna-NBQX/07-15-24/selected_zda//analysis02_01_06/182.jpg\n",
      "File created: C:/Users/jjudge3/Desktop/Data/mm_full_pipeline_targets/Anna-NBQX/07-15-24/selected_zda//analysis02_01_06/186.jpg\n",
      "File created: C:/Users/jjudge3/Desktop/Data/mm_full_pipeline_targets/Anna-NBQX/07-15-24/selected_zda//analysis02_01_06/190.jpg\n",
      "File created: C:/Users/jjudge3/Desktop/Data/mm_full_pipeline_targets/Anna-NBQX/07-15-24/selected_zda//analysis02_01_06/194.jpg\n",
      "File created: C:/Users/jjudge3/Desktop/Data/mm_full_pipeline_targets/Anna-NBQX/07-15-24/selected_zda//analysis02_01_06/198.jpg\n",
      "File created: C:/Users/jjudge3/Desktop/Data/mm_full_pipeline_targets/Anna-NBQX/07-15-24/selected_zda//analysis02_01_06/202.jpg\n",
      "File created: C:/Users/jjudge3/Desktop/Data/mm_full_pipeline_targets/Anna-NBQX/07-15-24/selected_zda//analysis02_01_06/206.jpg\n",
      "File created: C:/Users/jjudge3/Desktop/Data/mm_full_pipeline_targets/Anna-NBQX/07-15-24/selected_zda//analysis02_01_06/210.jpg\n",
      "File created: C:/Users/jjudge3/Desktop/Data/mm_full_pipeline_targets/Anna-NBQX/07-15-24/selected_zda//analysis02_01_06/214.jpg\n",
      "File created: C:/Users/jjudge3/Desktop/Data/mm_full_pipeline_targets/Anna-NBQX/07-15-24/selected_zda//analysis02_01_06/218.jpg\n",
      "File created: C:/Users/jjudge3/Desktop/Data/mm_full_pipeline_targets/Anna-NBQX/07-15-24/selected_zda//analysis02_01_06/222.jpg\n",
      "File created: C:/Users/jjudge3/Desktop/Data/mm_full_pipeline_targets/Anna-NBQX/07-15-24/selected_zda//analysis02_01_06/226.jpg\n",
      "File created: C:/Users/jjudge3/Desktop/Data/mm_full_pipeline_targets/Anna-NBQX/07-15-24/selected_zda//analysis02_01_06/230.jpg\n",
      "File created: C:/Users/jjudge3/Desktop/Data/mm_full_pipeline_targets/Anna-NBQX/07-15-24/selected_zda//analysis02_01_06/234.jpg\n",
      "File created: C:/Users/jjudge3/Desktop/Data/mm_full_pipeline_targets/Anna-NBQX/07-15-24/selected_zda//analysis02_01_06/238.jpg\n",
      "File created: C:/Users/jjudge3/Desktop/Data/mm_full_pipeline_targets/Anna-NBQX/07-15-24/selected_zda//analysis02_01_06/242.jpg\n",
      "File created: C:/Users/jjudge3/Desktop/Data/mm_full_pipeline_targets/Anna-NBQX/07-15-24/selected_zda//analysis02_01_06/246.jpg\n",
      "File created: C:/Users/jjudge3/Desktop/Data/mm_full_pipeline_targets/Anna-NBQX/07-15-24/selected_zda//analysis02_01_06/250.jpg\n",
      "File created: C:/Users/jjudge3/Desktop/Data/mm_full_pipeline_targets/Anna-NBQX/07-15-24/selected_zda//analysis02_01_06/254.jpg\n",
      "File created: C:/Users/jjudge3/Desktop/Data/mm_full_pipeline_targets/Anna-NBQX/07-15-24/selected_zda//analysis02_01_06/258.jpg\n",
      "File created: C:/Users/jjudge3/Desktop/Data/mm_full_pipeline_targets/Anna-NBQX/07-15-24/selected_zda//analysis02_01_06/262.jpg\n",
      "File created: C:/Users/jjudge3/Desktop/Data/mm_full_pipeline_targets/Anna-NBQX/07-15-24/selected_zda//analysis02_01_06/266.jpg\n",
      "File created: C:/Users/jjudge3/Desktop/Data/mm_full_pipeline_targets/Anna-NBQX/07-15-24/selected_zda//analysis02_01_06/270.jpg\n",
      "File created: C:/Users/jjudge3/Desktop/Data/mm_full_pipeline_targets/Anna-NBQX/07-15-24/selected_zda//analysis02_01_06/274.jpg\n",
      "File created: C:/Users/jjudge3/Desktop/Data/mm_full_pipeline_targets/Anna-NBQX/07-15-24/selected_zda//analysis02_01_06/278.jpg\n",
      "File created: C:/Users/jjudge3/Desktop/Data/mm_full_pipeline_targets/Anna-NBQX/07-15-24/selected_zda//analysis02_01_06/282.jpg\n",
      "File created: C:/Users/jjudge3/Desktop/Data/mm_full_pipeline_targets/Anna-NBQX/07-15-24/selected_zda//analysis02_01_06/286.jpg\n",
      "File created: C:/Users/jjudge3/Desktop/Data/mm_full_pipeline_targets/Anna-NBQX/07-15-24/selected_zda//analysis02_01_06/290.jpg\n",
      "CREATED MOVIE: 02_01_06movie.gif\n",
      "C:/Users/jjudge3/Desktop/Data/mm_full_pipeline_targets/Anna-NBQX/07-17-24\n",
      "03_01_01\n",
      "\n",
      "\n",
      "Opening 03_01_01.zda\n",
      "Saved intermed_snr_df file: C:/Users/jjudge3/Desktop/Data/mm_full_pipeline_targets/Anna-NBQX/07-17-24/selected_zda//Data.dat\n",
      "Moved color upper bound from 42.83 to 50.33\n",
      "File created: C:/Users/jjudge3/Desktop/Data/mm_full_pipeline_targets/Anna-NBQX/07-17-24/selected_zda//analysis03_01_01/130.jpg\n",
      "File created: C:/Users/jjudge3/Desktop/Data/mm_full_pipeline_targets/Anna-NBQX/07-17-24/selected_zda//analysis03_01_01/134.jpg\n",
      "File created: C:/Users/jjudge3/Desktop/Data/mm_full_pipeline_targets/Anna-NBQX/07-17-24/selected_zda//analysis03_01_01/138.jpg\n",
      "File created: C:/Users/jjudge3/Desktop/Data/mm_full_pipeline_targets/Anna-NBQX/07-17-24/selected_zda//analysis03_01_01/142.jpg\n",
      "File created: C:/Users/jjudge3/Desktop/Data/mm_full_pipeline_targets/Anna-NBQX/07-17-24/selected_zda//analysis03_01_01/146.jpg\n",
      "File created: C:/Users/jjudge3/Desktop/Data/mm_full_pipeline_targets/Anna-NBQX/07-17-24/selected_zda//analysis03_01_01/150.jpg\n",
      "File created: C:/Users/jjudge3/Desktop/Data/mm_full_pipeline_targets/Anna-NBQX/07-17-24/selected_zda//analysis03_01_01/154.jpg\n",
      "File created: C:/Users/jjudge3/Desktop/Data/mm_full_pipeline_targets/Anna-NBQX/07-17-24/selected_zda//analysis03_01_01/158.jpg\n",
      "File created: C:/Users/jjudge3/Desktop/Data/mm_full_pipeline_targets/Anna-NBQX/07-17-24/selected_zda//analysis03_01_01/162.jpg\n",
      "File created: C:/Users/jjudge3/Desktop/Data/mm_full_pipeline_targets/Anna-NBQX/07-17-24/selected_zda//analysis03_01_01/166.jpg\n",
      "File created: C:/Users/jjudge3/Desktop/Data/mm_full_pipeline_targets/Anna-NBQX/07-17-24/selected_zda//analysis03_01_01/170.jpg\n",
      "File created: C:/Users/jjudge3/Desktop/Data/mm_full_pipeline_targets/Anna-NBQX/07-17-24/selected_zda//analysis03_01_01/174.jpg\n",
      "File created: C:/Users/jjudge3/Desktop/Data/mm_full_pipeline_targets/Anna-NBQX/07-17-24/selected_zda//analysis03_01_01/178.jpg\n",
      "File created: C:/Users/jjudge3/Desktop/Data/mm_full_pipeline_targets/Anna-NBQX/07-17-24/selected_zda//analysis03_01_01/182.jpg\n",
      "File created: C:/Users/jjudge3/Desktop/Data/mm_full_pipeline_targets/Anna-NBQX/07-17-24/selected_zda//analysis03_01_01/186.jpg\n",
      "File created: C:/Users/jjudge3/Desktop/Data/mm_full_pipeline_targets/Anna-NBQX/07-17-24/selected_zda//analysis03_01_01/190.jpg\n",
      "File created: C:/Users/jjudge3/Desktop/Data/mm_full_pipeline_targets/Anna-NBQX/07-17-24/selected_zda//analysis03_01_01/194.jpg\n",
      "File created: C:/Users/jjudge3/Desktop/Data/mm_full_pipeline_targets/Anna-NBQX/07-17-24/selected_zda//analysis03_01_01/198.jpg\n",
      "File created: C:/Users/jjudge3/Desktop/Data/mm_full_pipeline_targets/Anna-NBQX/07-17-24/selected_zda//analysis03_01_01/202.jpg\n",
      "File created: C:/Users/jjudge3/Desktop/Data/mm_full_pipeline_targets/Anna-NBQX/07-17-24/selected_zda//analysis03_01_01/206.jpg\n",
      "File created: C:/Users/jjudge3/Desktop/Data/mm_full_pipeline_targets/Anna-NBQX/07-17-24/selected_zda//analysis03_01_01/210.jpg\n",
      "File created: C:/Users/jjudge3/Desktop/Data/mm_full_pipeline_targets/Anna-NBQX/07-17-24/selected_zda//analysis03_01_01/214.jpg\n",
      "File created: C:/Users/jjudge3/Desktop/Data/mm_full_pipeline_targets/Anna-NBQX/07-17-24/selected_zda//analysis03_01_01/218.jpg\n",
      "File created: C:/Users/jjudge3/Desktop/Data/mm_full_pipeline_targets/Anna-NBQX/07-17-24/selected_zda//analysis03_01_01/222.jpg\n",
      "File created: C:/Users/jjudge3/Desktop/Data/mm_full_pipeline_targets/Anna-NBQX/07-17-24/selected_zda//analysis03_01_01/226.jpg\n",
      "File created: C:/Users/jjudge3/Desktop/Data/mm_full_pipeline_targets/Anna-NBQX/07-17-24/selected_zda//analysis03_01_01/230.jpg\n",
      "File created: C:/Users/jjudge3/Desktop/Data/mm_full_pipeline_targets/Anna-NBQX/07-17-24/selected_zda//analysis03_01_01/234.jpg\n",
      "File created: C:/Users/jjudge3/Desktop/Data/mm_full_pipeline_targets/Anna-NBQX/07-17-24/selected_zda//analysis03_01_01/238.jpg\n",
      "File created: C:/Users/jjudge3/Desktop/Data/mm_full_pipeline_targets/Anna-NBQX/07-17-24/selected_zda//analysis03_01_01/242.jpg\n",
      "File created: C:/Users/jjudge3/Desktop/Data/mm_full_pipeline_targets/Anna-NBQX/07-17-24/selected_zda//analysis03_01_01/246.jpg\n",
      "File created: C:/Users/jjudge3/Desktop/Data/mm_full_pipeline_targets/Anna-NBQX/07-17-24/selected_zda//analysis03_01_01/250.jpg\n",
      "File created: C:/Users/jjudge3/Desktop/Data/mm_full_pipeline_targets/Anna-NBQX/07-17-24/selected_zda//analysis03_01_01/254.jpg\n",
      "File created: C:/Users/jjudge3/Desktop/Data/mm_full_pipeline_targets/Anna-NBQX/07-17-24/selected_zda//analysis03_01_01/258.jpg\n",
      "File created: C:/Users/jjudge3/Desktop/Data/mm_full_pipeline_targets/Anna-NBQX/07-17-24/selected_zda//analysis03_01_01/262.jpg\n",
      "File created: C:/Users/jjudge3/Desktop/Data/mm_full_pipeline_targets/Anna-NBQX/07-17-24/selected_zda//analysis03_01_01/266.jpg\n",
      "File created: C:/Users/jjudge3/Desktop/Data/mm_full_pipeline_targets/Anna-NBQX/07-17-24/selected_zda//analysis03_01_01/270.jpg\n",
      "File created: C:/Users/jjudge3/Desktop/Data/mm_full_pipeline_targets/Anna-NBQX/07-17-24/selected_zda//analysis03_01_01/274.jpg\n",
      "File created: C:/Users/jjudge3/Desktop/Data/mm_full_pipeline_targets/Anna-NBQX/07-17-24/selected_zda//analysis03_01_01/278.jpg\n",
      "File created: C:/Users/jjudge3/Desktop/Data/mm_full_pipeline_targets/Anna-NBQX/07-17-24/selected_zda//analysis03_01_01/282.jpg\n",
      "File created: C:/Users/jjudge3/Desktop/Data/mm_full_pipeline_targets/Anna-NBQX/07-17-24/selected_zda//analysis03_01_01/286.jpg\n",
      "File created: C:/Users/jjudge3/Desktop/Data/mm_full_pipeline_targets/Anna-NBQX/07-17-24/selected_zda//analysis03_01_01/290.jpg\n",
      "CREATED MOVIE: 03_01_01movie.gif\n",
      "03_01_03\n",
      "\n",
      "\n",
      "Opening 03_01_03.zda\n",
      "Saved intermed_snr_df file: C:/Users/jjudge3/Desktop/Data/mm_full_pipeline_targets/Anna-NBQX/07-17-24/selected_zda//Data.dat\n",
      "Moved color upper bound from 50.33 to 39.12\n",
      "File created: C:/Users/jjudge3/Desktop/Data/mm_full_pipeline_targets/Anna-NBQX/07-17-24/selected_zda//analysis03_01_03/130.jpg\n",
      "File created: C:/Users/jjudge3/Desktop/Data/mm_full_pipeline_targets/Anna-NBQX/07-17-24/selected_zda//analysis03_01_03/134.jpg\n",
      "File created: C:/Users/jjudge3/Desktop/Data/mm_full_pipeline_targets/Anna-NBQX/07-17-24/selected_zda//analysis03_01_03/138.jpg\n",
      "File created: C:/Users/jjudge3/Desktop/Data/mm_full_pipeline_targets/Anna-NBQX/07-17-24/selected_zda//analysis03_01_03/142.jpg\n",
      "File created: C:/Users/jjudge3/Desktop/Data/mm_full_pipeline_targets/Anna-NBQX/07-17-24/selected_zda//analysis03_01_03/146.jpg\n",
      "File created: C:/Users/jjudge3/Desktop/Data/mm_full_pipeline_targets/Anna-NBQX/07-17-24/selected_zda//analysis03_01_03/150.jpg\n",
      "File created: C:/Users/jjudge3/Desktop/Data/mm_full_pipeline_targets/Anna-NBQX/07-17-24/selected_zda//analysis03_01_03/154.jpg\n",
      "File created: C:/Users/jjudge3/Desktop/Data/mm_full_pipeline_targets/Anna-NBQX/07-17-24/selected_zda//analysis03_01_03/158.jpg\n",
      "File created: C:/Users/jjudge3/Desktop/Data/mm_full_pipeline_targets/Anna-NBQX/07-17-24/selected_zda//analysis03_01_03/162.jpg\n",
      "File created: C:/Users/jjudge3/Desktop/Data/mm_full_pipeline_targets/Anna-NBQX/07-17-24/selected_zda//analysis03_01_03/166.jpg\n",
      "File created: C:/Users/jjudge3/Desktop/Data/mm_full_pipeline_targets/Anna-NBQX/07-17-24/selected_zda//analysis03_01_03/170.jpg\n",
      "File created: C:/Users/jjudge3/Desktop/Data/mm_full_pipeline_targets/Anna-NBQX/07-17-24/selected_zda//analysis03_01_03/174.jpg\n",
      "File created: C:/Users/jjudge3/Desktop/Data/mm_full_pipeline_targets/Anna-NBQX/07-17-24/selected_zda//analysis03_01_03/178.jpg\n",
      "File created: C:/Users/jjudge3/Desktop/Data/mm_full_pipeline_targets/Anna-NBQX/07-17-24/selected_zda//analysis03_01_03/182.jpg\n",
      "File created: C:/Users/jjudge3/Desktop/Data/mm_full_pipeline_targets/Anna-NBQX/07-17-24/selected_zda//analysis03_01_03/186.jpg\n",
      "File created: C:/Users/jjudge3/Desktop/Data/mm_full_pipeline_targets/Anna-NBQX/07-17-24/selected_zda//analysis03_01_03/190.jpg\n",
      "File created: C:/Users/jjudge3/Desktop/Data/mm_full_pipeline_targets/Anna-NBQX/07-17-24/selected_zda//analysis03_01_03/194.jpg\n",
      "File created: C:/Users/jjudge3/Desktop/Data/mm_full_pipeline_targets/Anna-NBQX/07-17-24/selected_zda//analysis03_01_03/198.jpg\n",
      "File created: C:/Users/jjudge3/Desktop/Data/mm_full_pipeline_targets/Anna-NBQX/07-17-24/selected_zda//analysis03_01_03/202.jpg\n",
      "File created: C:/Users/jjudge3/Desktop/Data/mm_full_pipeline_targets/Anna-NBQX/07-17-24/selected_zda//analysis03_01_03/206.jpg\n",
      "File created: C:/Users/jjudge3/Desktop/Data/mm_full_pipeline_targets/Anna-NBQX/07-17-24/selected_zda//analysis03_01_03/210.jpg\n",
      "File created: C:/Users/jjudge3/Desktop/Data/mm_full_pipeline_targets/Anna-NBQX/07-17-24/selected_zda//analysis03_01_03/214.jpg\n",
      "File created: C:/Users/jjudge3/Desktop/Data/mm_full_pipeline_targets/Anna-NBQX/07-17-24/selected_zda//analysis03_01_03/218.jpg\n",
      "File created: C:/Users/jjudge3/Desktop/Data/mm_full_pipeline_targets/Anna-NBQX/07-17-24/selected_zda//analysis03_01_03/222.jpg\n",
      "File created: C:/Users/jjudge3/Desktop/Data/mm_full_pipeline_targets/Anna-NBQX/07-17-24/selected_zda//analysis03_01_03/226.jpg\n",
      "File created: C:/Users/jjudge3/Desktop/Data/mm_full_pipeline_targets/Anna-NBQX/07-17-24/selected_zda//analysis03_01_03/230.jpg\n",
      "File created: C:/Users/jjudge3/Desktop/Data/mm_full_pipeline_targets/Anna-NBQX/07-17-24/selected_zda//analysis03_01_03/234.jpg\n",
      "File created: C:/Users/jjudge3/Desktop/Data/mm_full_pipeline_targets/Anna-NBQX/07-17-24/selected_zda//analysis03_01_03/238.jpg\n",
      "File created: C:/Users/jjudge3/Desktop/Data/mm_full_pipeline_targets/Anna-NBQX/07-17-24/selected_zda//analysis03_01_03/242.jpg\n",
      "File created: C:/Users/jjudge3/Desktop/Data/mm_full_pipeline_targets/Anna-NBQX/07-17-24/selected_zda//analysis03_01_03/246.jpg\n",
      "File created: C:/Users/jjudge3/Desktop/Data/mm_full_pipeline_targets/Anna-NBQX/07-17-24/selected_zda//analysis03_01_03/250.jpg\n",
      "File created: C:/Users/jjudge3/Desktop/Data/mm_full_pipeline_targets/Anna-NBQX/07-17-24/selected_zda//analysis03_01_03/254.jpg\n",
      "File created: C:/Users/jjudge3/Desktop/Data/mm_full_pipeline_targets/Anna-NBQX/07-17-24/selected_zda//analysis03_01_03/258.jpg\n",
      "File created: C:/Users/jjudge3/Desktop/Data/mm_full_pipeline_targets/Anna-NBQX/07-17-24/selected_zda//analysis03_01_03/262.jpg\n",
      "File created: C:/Users/jjudge3/Desktop/Data/mm_full_pipeline_targets/Anna-NBQX/07-17-24/selected_zda//analysis03_01_03/266.jpg\n",
      "File created: C:/Users/jjudge3/Desktop/Data/mm_full_pipeline_targets/Anna-NBQX/07-17-24/selected_zda//analysis03_01_03/270.jpg\n",
      "File created: C:/Users/jjudge3/Desktop/Data/mm_full_pipeline_targets/Anna-NBQX/07-17-24/selected_zda//analysis03_01_03/274.jpg\n",
      "File created: C:/Users/jjudge3/Desktop/Data/mm_full_pipeline_targets/Anna-NBQX/07-17-24/selected_zda//analysis03_01_03/278.jpg\n",
      "File created: C:/Users/jjudge3/Desktop/Data/mm_full_pipeline_targets/Anna-NBQX/07-17-24/selected_zda//analysis03_01_03/282.jpg\n",
      "File created: C:/Users/jjudge3/Desktop/Data/mm_full_pipeline_targets/Anna-NBQX/07-17-24/selected_zda//analysis03_01_03/286.jpg\n",
      "File created: C:/Users/jjudge3/Desktop/Data/mm_full_pipeline_targets/Anna-NBQX/07-17-24/selected_zda//analysis03_01_03/290.jpg\n",
      "CREATED MOVIE: 03_01_03movie.gif\n",
      "03_01_05\n",
      "\n",
      "\n",
      "Opening 03_01_05.zda\n",
      "Saved intermed_snr_df file: C:/Users/jjudge3/Desktop/Data/mm_full_pipeline_targets/Anna-NBQX/07-17-24/selected_zda//Data.dat\n",
      "Moved color upper bound from 39.12 to 18.83\n",
      "File created: C:/Users/jjudge3/Desktop/Data/mm_full_pipeline_targets/Anna-NBQX/07-17-24/selected_zda//analysis03_01_05/130.jpg\n",
      "File created: C:/Users/jjudge3/Desktop/Data/mm_full_pipeline_targets/Anna-NBQX/07-17-24/selected_zda//analysis03_01_05/134.jpg\n",
      "File created: C:/Users/jjudge3/Desktop/Data/mm_full_pipeline_targets/Anna-NBQX/07-17-24/selected_zda//analysis03_01_05/138.jpg\n",
      "File created: C:/Users/jjudge3/Desktop/Data/mm_full_pipeline_targets/Anna-NBQX/07-17-24/selected_zda//analysis03_01_05/142.jpg\n",
      "File created: C:/Users/jjudge3/Desktop/Data/mm_full_pipeline_targets/Anna-NBQX/07-17-24/selected_zda//analysis03_01_05/146.jpg\n",
      "File created: C:/Users/jjudge3/Desktop/Data/mm_full_pipeline_targets/Anna-NBQX/07-17-24/selected_zda//analysis03_01_05/150.jpg\n",
      "File created: C:/Users/jjudge3/Desktop/Data/mm_full_pipeline_targets/Anna-NBQX/07-17-24/selected_zda//analysis03_01_05/154.jpg\n",
      "File created: C:/Users/jjudge3/Desktop/Data/mm_full_pipeline_targets/Anna-NBQX/07-17-24/selected_zda//analysis03_01_05/158.jpg\n",
      "File created: C:/Users/jjudge3/Desktop/Data/mm_full_pipeline_targets/Anna-NBQX/07-17-24/selected_zda//analysis03_01_05/162.jpg\n",
      "File created: C:/Users/jjudge3/Desktop/Data/mm_full_pipeline_targets/Anna-NBQX/07-17-24/selected_zda//analysis03_01_05/166.jpg\n",
      "File created: C:/Users/jjudge3/Desktop/Data/mm_full_pipeline_targets/Anna-NBQX/07-17-24/selected_zda//analysis03_01_05/170.jpg\n",
      "File created: C:/Users/jjudge3/Desktop/Data/mm_full_pipeline_targets/Anna-NBQX/07-17-24/selected_zda//analysis03_01_05/174.jpg\n",
      "File created: C:/Users/jjudge3/Desktop/Data/mm_full_pipeline_targets/Anna-NBQX/07-17-24/selected_zda//analysis03_01_05/178.jpg\n",
      "File created: C:/Users/jjudge3/Desktop/Data/mm_full_pipeline_targets/Anna-NBQX/07-17-24/selected_zda//analysis03_01_05/182.jpg\n",
      "File created: C:/Users/jjudge3/Desktop/Data/mm_full_pipeline_targets/Anna-NBQX/07-17-24/selected_zda//analysis03_01_05/186.jpg\n",
      "File created: C:/Users/jjudge3/Desktop/Data/mm_full_pipeline_targets/Anna-NBQX/07-17-24/selected_zda//analysis03_01_05/190.jpg\n",
      "File created: C:/Users/jjudge3/Desktop/Data/mm_full_pipeline_targets/Anna-NBQX/07-17-24/selected_zda//analysis03_01_05/194.jpg\n",
      "File created: C:/Users/jjudge3/Desktop/Data/mm_full_pipeline_targets/Anna-NBQX/07-17-24/selected_zda//analysis03_01_05/198.jpg\n",
      "File created: C:/Users/jjudge3/Desktop/Data/mm_full_pipeline_targets/Anna-NBQX/07-17-24/selected_zda//analysis03_01_05/202.jpg\n",
      "File created: C:/Users/jjudge3/Desktop/Data/mm_full_pipeline_targets/Anna-NBQX/07-17-24/selected_zda//analysis03_01_05/206.jpg\n",
      "File created: C:/Users/jjudge3/Desktop/Data/mm_full_pipeline_targets/Anna-NBQX/07-17-24/selected_zda//analysis03_01_05/210.jpg\n",
      "File created: C:/Users/jjudge3/Desktop/Data/mm_full_pipeline_targets/Anna-NBQX/07-17-24/selected_zda//analysis03_01_05/214.jpg\n",
      "File created: C:/Users/jjudge3/Desktop/Data/mm_full_pipeline_targets/Anna-NBQX/07-17-24/selected_zda//analysis03_01_05/218.jpg\n",
      "File created: C:/Users/jjudge3/Desktop/Data/mm_full_pipeline_targets/Anna-NBQX/07-17-24/selected_zda//analysis03_01_05/222.jpg\n",
      "File created: C:/Users/jjudge3/Desktop/Data/mm_full_pipeline_targets/Anna-NBQX/07-17-24/selected_zda//analysis03_01_05/226.jpg\n",
      "File created: C:/Users/jjudge3/Desktop/Data/mm_full_pipeline_targets/Anna-NBQX/07-17-24/selected_zda//analysis03_01_05/230.jpg\n",
      "File created: C:/Users/jjudge3/Desktop/Data/mm_full_pipeline_targets/Anna-NBQX/07-17-24/selected_zda//analysis03_01_05/234.jpg\n",
      "File created: C:/Users/jjudge3/Desktop/Data/mm_full_pipeline_targets/Anna-NBQX/07-17-24/selected_zda//analysis03_01_05/238.jpg\n",
      "File created: C:/Users/jjudge3/Desktop/Data/mm_full_pipeline_targets/Anna-NBQX/07-17-24/selected_zda//analysis03_01_05/242.jpg\n",
      "File created: C:/Users/jjudge3/Desktop/Data/mm_full_pipeline_targets/Anna-NBQX/07-17-24/selected_zda//analysis03_01_05/246.jpg\n",
      "File created: C:/Users/jjudge3/Desktop/Data/mm_full_pipeline_targets/Anna-NBQX/07-17-24/selected_zda//analysis03_01_05/250.jpg\n",
      "File created: C:/Users/jjudge3/Desktop/Data/mm_full_pipeline_targets/Anna-NBQX/07-17-24/selected_zda//analysis03_01_05/254.jpg\n",
      "File created: C:/Users/jjudge3/Desktop/Data/mm_full_pipeline_targets/Anna-NBQX/07-17-24/selected_zda//analysis03_01_05/258.jpg\n",
      "File created: C:/Users/jjudge3/Desktop/Data/mm_full_pipeline_targets/Anna-NBQX/07-17-24/selected_zda//analysis03_01_05/262.jpg\n",
      "File created: C:/Users/jjudge3/Desktop/Data/mm_full_pipeline_targets/Anna-NBQX/07-17-24/selected_zda//analysis03_01_05/266.jpg\n",
      "File created: C:/Users/jjudge3/Desktop/Data/mm_full_pipeline_targets/Anna-NBQX/07-17-24/selected_zda//analysis03_01_05/270.jpg\n",
      "File created: C:/Users/jjudge3/Desktop/Data/mm_full_pipeline_targets/Anna-NBQX/07-17-24/selected_zda//analysis03_01_05/274.jpg\n",
      "File created: C:/Users/jjudge3/Desktop/Data/mm_full_pipeline_targets/Anna-NBQX/07-17-24/selected_zda//analysis03_01_05/278.jpg\n",
      "File created: C:/Users/jjudge3/Desktop/Data/mm_full_pipeline_targets/Anna-NBQX/07-17-24/selected_zda//analysis03_01_05/282.jpg\n",
      "File created: C:/Users/jjudge3/Desktop/Data/mm_full_pipeline_targets/Anna-NBQX/07-17-24/selected_zda//analysis03_01_05/286.jpg\n",
      "File created: C:/Users/jjudge3/Desktop/Data/mm_full_pipeline_targets/Anna-NBQX/07-17-24/selected_zda//analysis03_01_05/290.jpg\n",
      "CREATED MOVIE: 03_01_05movie.gif\n",
      "C:/Users/jjudge3/Desktop/Data/mm_full_pipeline_targets/Anna-NBQX/07-25-24\n",
      "01_01_01\n",
      "\n",
      "\n",
      "Opening 01_01_01.zda\n",
      "Saved intermed_snr_df file: C:/Users/jjudge3/Desktop/Data/mm_full_pipeline_targets/Anna-NBQX/07-25-24/selected_zda//Data.dat\n",
      "Moved color upper bound from 18.83 to 18.85\n",
      "File created: C:/Users/jjudge3/Desktop/Data/mm_full_pipeline_targets/Anna-NBQX/07-25-24/selected_zda//analysis01_01_01/130.jpg\n",
      "File created: C:/Users/jjudge3/Desktop/Data/mm_full_pipeline_targets/Anna-NBQX/07-25-24/selected_zda//analysis01_01_01/134.jpg\n",
      "File created: C:/Users/jjudge3/Desktop/Data/mm_full_pipeline_targets/Anna-NBQX/07-25-24/selected_zda//analysis01_01_01/138.jpg\n",
      "File created: C:/Users/jjudge3/Desktop/Data/mm_full_pipeline_targets/Anna-NBQX/07-25-24/selected_zda//analysis01_01_01/142.jpg\n",
      "File created: C:/Users/jjudge3/Desktop/Data/mm_full_pipeline_targets/Anna-NBQX/07-25-24/selected_zda//analysis01_01_01/146.jpg\n",
      "File created: C:/Users/jjudge3/Desktop/Data/mm_full_pipeline_targets/Anna-NBQX/07-25-24/selected_zda//analysis01_01_01/150.jpg\n",
      "File created: C:/Users/jjudge3/Desktop/Data/mm_full_pipeline_targets/Anna-NBQX/07-25-24/selected_zda//analysis01_01_01/154.jpg\n",
      "File created: C:/Users/jjudge3/Desktop/Data/mm_full_pipeline_targets/Anna-NBQX/07-25-24/selected_zda//analysis01_01_01/158.jpg\n",
      "File created: C:/Users/jjudge3/Desktop/Data/mm_full_pipeline_targets/Anna-NBQX/07-25-24/selected_zda//analysis01_01_01/162.jpg\n",
      "File created: C:/Users/jjudge3/Desktop/Data/mm_full_pipeline_targets/Anna-NBQX/07-25-24/selected_zda//analysis01_01_01/166.jpg\n",
      "File created: C:/Users/jjudge3/Desktop/Data/mm_full_pipeline_targets/Anna-NBQX/07-25-24/selected_zda//analysis01_01_01/170.jpg\n",
      "File created: C:/Users/jjudge3/Desktop/Data/mm_full_pipeline_targets/Anna-NBQX/07-25-24/selected_zda//analysis01_01_01/174.jpg\n",
      "File created: C:/Users/jjudge3/Desktop/Data/mm_full_pipeline_targets/Anna-NBQX/07-25-24/selected_zda//analysis01_01_01/178.jpg\n",
      "File created: C:/Users/jjudge3/Desktop/Data/mm_full_pipeline_targets/Anna-NBQX/07-25-24/selected_zda//analysis01_01_01/182.jpg\n",
      "File created: C:/Users/jjudge3/Desktop/Data/mm_full_pipeline_targets/Anna-NBQX/07-25-24/selected_zda//analysis01_01_01/186.jpg\n",
      "File created: C:/Users/jjudge3/Desktop/Data/mm_full_pipeline_targets/Anna-NBQX/07-25-24/selected_zda//analysis01_01_01/190.jpg\n",
      "File created: C:/Users/jjudge3/Desktop/Data/mm_full_pipeline_targets/Anna-NBQX/07-25-24/selected_zda//analysis01_01_01/194.jpg\n",
      "File created: C:/Users/jjudge3/Desktop/Data/mm_full_pipeline_targets/Anna-NBQX/07-25-24/selected_zda//analysis01_01_01/198.jpg\n",
      "File created: C:/Users/jjudge3/Desktop/Data/mm_full_pipeline_targets/Anna-NBQX/07-25-24/selected_zda//analysis01_01_01/202.jpg\n",
      "File created: C:/Users/jjudge3/Desktop/Data/mm_full_pipeline_targets/Anna-NBQX/07-25-24/selected_zda//analysis01_01_01/206.jpg\n",
      "File created: C:/Users/jjudge3/Desktop/Data/mm_full_pipeline_targets/Anna-NBQX/07-25-24/selected_zda//analysis01_01_01/210.jpg\n",
      "File created: C:/Users/jjudge3/Desktop/Data/mm_full_pipeline_targets/Anna-NBQX/07-25-24/selected_zda//analysis01_01_01/214.jpg\n",
      "File created: C:/Users/jjudge3/Desktop/Data/mm_full_pipeline_targets/Anna-NBQX/07-25-24/selected_zda//analysis01_01_01/218.jpg\n",
      "File created: C:/Users/jjudge3/Desktop/Data/mm_full_pipeline_targets/Anna-NBQX/07-25-24/selected_zda//analysis01_01_01/222.jpg\n",
      "File created: C:/Users/jjudge3/Desktop/Data/mm_full_pipeline_targets/Anna-NBQX/07-25-24/selected_zda//analysis01_01_01/226.jpg\n",
      "File created: C:/Users/jjudge3/Desktop/Data/mm_full_pipeline_targets/Anna-NBQX/07-25-24/selected_zda//analysis01_01_01/230.jpg\n",
      "File created: C:/Users/jjudge3/Desktop/Data/mm_full_pipeline_targets/Anna-NBQX/07-25-24/selected_zda//analysis01_01_01/234.jpg\n",
      "File created: C:/Users/jjudge3/Desktop/Data/mm_full_pipeline_targets/Anna-NBQX/07-25-24/selected_zda//analysis01_01_01/238.jpg\n",
      "File created: C:/Users/jjudge3/Desktop/Data/mm_full_pipeline_targets/Anna-NBQX/07-25-24/selected_zda//analysis01_01_01/242.jpg\n",
      "File created: C:/Users/jjudge3/Desktop/Data/mm_full_pipeline_targets/Anna-NBQX/07-25-24/selected_zda//analysis01_01_01/246.jpg\n",
      "File created: C:/Users/jjudge3/Desktop/Data/mm_full_pipeline_targets/Anna-NBQX/07-25-24/selected_zda//analysis01_01_01/250.jpg\n",
      "File created: C:/Users/jjudge3/Desktop/Data/mm_full_pipeline_targets/Anna-NBQX/07-25-24/selected_zda//analysis01_01_01/254.jpg\n",
      "File created: C:/Users/jjudge3/Desktop/Data/mm_full_pipeline_targets/Anna-NBQX/07-25-24/selected_zda//analysis01_01_01/258.jpg\n",
      "File created: C:/Users/jjudge3/Desktop/Data/mm_full_pipeline_targets/Anna-NBQX/07-25-24/selected_zda//analysis01_01_01/262.jpg\n",
      "File created: C:/Users/jjudge3/Desktop/Data/mm_full_pipeline_targets/Anna-NBQX/07-25-24/selected_zda//analysis01_01_01/266.jpg\n",
      "File created: C:/Users/jjudge3/Desktop/Data/mm_full_pipeline_targets/Anna-NBQX/07-25-24/selected_zda//analysis01_01_01/270.jpg\n",
      "File created: C:/Users/jjudge3/Desktop/Data/mm_full_pipeline_targets/Anna-NBQX/07-25-24/selected_zda//analysis01_01_01/274.jpg\n",
      "File created: C:/Users/jjudge3/Desktop/Data/mm_full_pipeline_targets/Anna-NBQX/07-25-24/selected_zda//analysis01_01_01/278.jpg\n",
      "File created: C:/Users/jjudge3/Desktop/Data/mm_full_pipeline_targets/Anna-NBQX/07-25-24/selected_zda//analysis01_01_01/282.jpg\n",
      "File created: C:/Users/jjudge3/Desktop/Data/mm_full_pipeline_targets/Anna-NBQX/07-25-24/selected_zda//analysis01_01_01/286.jpg\n",
      "File created: C:/Users/jjudge3/Desktop/Data/mm_full_pipeline_targets/Anna-NBQX/07-25-24/selected_zda//analysis01_01_01/290.jpg\n",
      "CREATED MOVIE: 01_01_01movie.gif\n",
      "01_01_02\n",
      "\n",
      "\n",
      "Opening 01_01_02.zda\n",
      "Saved intermed_snr_df file: C:/Users/jjudge3/Desktop/Data/mm_full_pipeline_targets/Anna-NBQX/07-25-24/selected_zda//Data.dat\n",
      "Moved color upper bound from 18.85 to 31.26\n",
      "File created: C:/Users/jjudge3/Desktop/Data/mm_full_pipeline_targets/Anna-NBQX/07-25-24/selected_zda//analysis01_01_02/130.jpg\n",
      "File created: C:/Users/jjudge3/Desktop/Data/mm_full_pipeline_targets/Anna-NBQX/07-25-24/selected_zda//analysis01_01_02/134.jpg\n",
      "File created: C:/Users/jjudge3/Desktop/Data/mm_full_pipeline_targets/Anna-NBQX/07-25-24/selected_zda//analysis01_01_02/138.jpg\n",
      "File created: C:/Users/jjudge3/Desktop/Data/mm_full_pipeline_targets/Anna-NBQX/07-25-24/selected_zda//analysis01_01_02/142.jpg\n",
      "File created: C:/Users/jjudge3/Desktop/Data/mm_full_pipeline_targets/Anna-NBQX/07-25-24/selected_zda//analysis01_01_02/146.jpg\n",
      "File created: C:/Users/jjudge3/Desktop/Data/mm_full_pipeline_targets/Anna-NBQX/07-25-24/selected_zda//analysis01_01_02/150.jpg\n",
      "File created: C:/Users/jjudge3/Desktop/Data/mm_full_pipeline_targets/Anna-NBQX/07-25-24/selected_zda//analysis01_01_02/154.jpg\n",
      "File created: C:/Users/jjudge3/Desktop/Data/mm_full_pipeline_targets/Anna-NBQX/07-25-24/selected_zda//analysis01_01_02/158.jpg\n",
      "File created: C:/Users/jjudge3/Desktop/Data/mm_full_pipeline_targets/Anna-NBQX/07-25-24/selected_zda//analysis01_01_02/162.jpg\n",
      "File created: C:/Users/jjudge3/Desktop/Data/mm_full_pipeline_targets/Anna-NBQX/07-25-24/selected_zda//analysis01_01_02/166.jpg\n",
      "File created: C:/Users/jjudge3/Desktop/Data/mm_full_pipeline_targets/Anna-NBQX/07-25-24/selected_zda//analysis01_01_02/170.jpg\n",
      "File created: C:/Users/jjudge3/Desktop/Data/mm_full_pipeline_targets/Anna-NBQX/07-25-24/selected_zda//analysis01_01_02/174.jpg\n",
      "File created: C:/Users/jjudge3/Desktop/Data/mm_full_pipeline_targets/Anna-NBQX/07-25-24/selected_zda//analysis01_01_02/178.jpg\n",
      "File created: C:/Users/jjudge3/Desktop/Data/mm_full_pipeline_targets/Anna-NBQX/07-25-24/selected_zda//analysis01_01_02/182.jpg\n",
      "File created: C:/Users/jjudge3/Desktop/Data/mm_full_pipeline_targets/Anna-NBQX/07-25-24/selected_zda//analysis01_01_02/186.jpg\n",
      "File created: C:/Users/jjudge3/Desktop/Data/mm_full_pipeline_targets/Anna-NBQX/07-25-24/selected_zda//analysis01_01_02/190.jpg\n",
      "File created: C:/Users/jjudge3/Desktop/Data/mm_full_pipeline_targets/Anna-NBQX/07-25-24/selected_zda//analysis01_01_02/194.jpg\n",
      "File created: C:/Users/jjudge3/Desktop/Data/mm_full_pipeline_targets/Anna-NBQX/07-25-24/selected_zda//analysis01_01_02/198.jpg\n",
      "File created: C:/Users/jjudge3/Desktop/Data/mm_full_pipeline_targets/Anna-NBQX/07-25-24/selected_zda//analysis01_01_02/202.jpg\n",
      "File created: C:/Users/jjudge3/Desktop/Data/mm_full_pipeline_targets/Anna-NBQX/07-25-24/selected_zda//analysis01_01_02/206.jpg\n",
      "File created: C:/Users/jjudge3/Desktop/Data/mm_full_pipeline_targets/Anna-NBQX/07-25-24/selected_zda//analysis01_01_02/210.jpg\n",
      "File created: C:/Users/jjudge3/Desktop/Data/mm_full_pipeline_targets/Anna-NBQX/07-25-24/selected_zda//analysis01_01_02/214.jpg\n",
      "File created: C:/Users/jjudge3/Desktop/Data/mm_full_pipeline_targets/Anna-NBQX/07-25-24/selected_zda//analysis01_01_02/218.jpg\n",
      "File created: C:/Users/jjudge3/Desktop/Data/mm_full_pipeline_targets/Anna-NBQX/07-25-24/selected_zda//analysis01_01_02/222.jpg\n",
      "File created: C:/Users/jjudge3/Desktop/Data/mm_full_pipeline_targets/Anna-NBQX/07-25-24/selected_zda//analysis01_01_02/226.jpg\n",
      "File created: C:/Users/jjudge3/Desktop/Data/mm_full_pipeline_targets/Anna-NBQX/07-25-24/selected_zda//analysis01_01_02/230.jpg\n",
      "File created: C:/Users/jjudge3/Desktop/Data/mm_full_pipeline_targets/Anna-NBQX/07-25-24/selected_zda//analysis01_01_02/234.jpg\n",
      "File created: C:/Users/jjudge3/Desktop/Data/mm_full_pipeline_targets/Anna-NBQX/07-25-24/selected_zda//analysis01_01_02/238.jpg\n",
      "File created: C:/Users/jjudge3/Desktop/Data/mm_full_pipeline_targets/Anna-NBQX/07-25-24/selected_zda//analysis01_01_02/242.jpg\n",
      "File created: C:/Users/jjudge3/Desktop/Data/mm_full_pipeline_targets/Anna-NBQX/07-25-24/selected_zda//analysis01_01_02/246.jpg\n",
      "File created: C:/Users/jjudge3/Desktop/Data/mm_full_pipeline_targets/Anna-NBQX/07-25-24/selected_zda//analysis01_01_02/250.jpg\n",
      "File created: C:/Users/jjudge3/Desktop/Data/mm_full_pipeline_targets/Anna-NBQX/07-25-24/selected_zda//analysis01_01_02/254.jpg\n",
      "File created: C:/Users/jjudge3/Desktop/Data/mm_full_pipeline_targets/Anna-NBQX/07-25-24/selected_zda//analysis01_01_02/258.jpg\n",
      "File created: C:/Users/jjudge3/Desktop/Data/mm_full_pipeline_targets/Anna-NBQX/07-25-24/selected_zda//analysis01_01_02/262.jpg\n",
      "File created: C:/Users/jjudge3/Desktop/Data/mm_full_pipeline_targets/Anna-NBQX/07-25-24/selected_zda//analysis01_01_02/266.jpg\n",
      "File created: C:/Users/jjudge3/Desktop/Data/mm_full_pipeline_targets/Anna-NBQX/07-25-24/selected_zda//analysis01_01_02/270.jpg\n",
      "File created: C:/Users/jjudge3/Desktop/Data/mm_full_pipeline_targets/Anna-NBQX/07-25-24/selected_zda//analysis01_01_02/274.jpg\n",
      "File created: C:/Users/jjudge3/Desktop/Data/mm_full_pipeline_targets/Anna-NBQX/07-25-24/selected_zda//analysis01_01_02/278.jpg\n",
      "File created: C:/Users/jjudge3/Desktop/Data/mm_full_pipeline_targets/Anna-NBQX/07-25-24/selected_zda//analysis01_01_02/282.jpg\n",
      "File created: C:/Users/jjudge3/Desktop/Data/mm_full_pipeline_targets/Anna-NBQX/07-25-24/selected_zda//analysis01_01_02/286.jpg\n",
      "File created: C:/Users/jjudge3/Desktop/Data/mm_full_pipeline_targets/Anna-NBQX/07-25-24/selected_zda//analysis01_01_02/290.jpg\n",
      "CREATED MOVIE: 01_01_02movie.gif\n",
      "01_01_06\n",
      "\n",
      "\n",
      "Opening 01_01_06.zda\n",
      "Saved intermed_snr_df file: C:/Users/jjudge3/Desktop/Data/mm_full_pipeline_targets/Anna-NBQX/07-25-24/selected_zda//Data.dat\n",
      "Moved color upper bound from 31.26 to 29.78\n",
      "File created: C:/Users/jjudge3/Desktop/Data/mm_full_pipeline_targets/Anna-NBQX/07-25-24/selected_zda//analysis01_01_06/130.jpg\n",
      "File created: C:/Users/jjudge3/Desktop/Data/mm_full_pipeline_targets/Anna-NBQX/07-25-24/selected_zda//analysis01_01_06/134.jpg\n",
      "File created: C:/Users/jjudge3/Desktop/Data/mm_full_pipeline_targets/Anna-NBQX/07-25-24/selected_zda//analysis01_01_06/138.jpg\n",
      "File created: C:/Users/jjudge3/Desktop/Data/mm_full_pipeline_targets/Anna-NBQX/07-25-24/selected_zda//analysis01_01_06/142.jpg\n",
      "File created: C:/Users/jjudge3/Desktop/Data/mm_full_pipeline_targets/Anna-NBQX/07-25-24/selected_zda//analysis01_01_06/146.jpg\n",
      "File created: C:/Users/jjudge3/Desktop/Data/mm_full_pipeline_targets/Anna-NBQX/07-25-24/selected_zda//analysis01_01_06/150.jpg\n",
      "File created: C:/Users/jjudge3/Desktop/Data/mm_full_pipeline_targets/Anna-NBQX/07-25-24/selected_zda//analysis01_01_06/154.jpg\n",
      "File created: C:/Users/jjudge3/Desktop/Data/mm_full_pipeline_targets/Anna-NBQX/07-25-24/selected_zda//analysis01_01_06/158.jpg\n",
      "File created: C:/Users/jjudge3/Desktop/Data/mm_full_pipeline_targets/Anna-NBQX/07-25-24/selected_zda//analysis01_01_06/162.jpg\n",
      "File created: C:/Users/jjudge3/Desktop/Data/mm_full_pipeline_targets/Anna-NBQX/07-25-24/selected_zda//analysis01_01_06/166.jpg\n",
      "File created: C:/Users/jjudge3/Desktop/Data/mm_full_pipeline_targets/Anna-NBQX/07-25-24/selected_zda//analysis01_01_06/170.jpg\n",
      "File created: C:/Users/jjudge3/Desktop/Data/mm_full_pipeline_targets/Anna-NBQX/07-25-24/selected_zda//analysis01_01_06/174.jpg\n",
      "File created: C:/Users/jjudge3/Desktop/Data/mm_full_pipeline_targets/Anna-NBQX/07-25-24/selected_zda//analysis01_01_06/178.jpg\n",
      "File created: C:/Users/jjudge3/Desktop/Data/mm_full_pipeline_targets/Anna-NBQX/07-25-24/selected_zda//analysis01_01_06/182.jpg\n",
      "File created: C:/Users/jjudge3/Desktop/Data/mm_full_pipeline_targets/Anna-NBQX/07-25-24/selected_zda//analysis01_01_06/186.jpg\n",
      "File created: C:/Users/jjudge3/Desktop/Data/mm_full_pipeline_targets/Anna-NBQX/07-25-24/selected_zda//analysis01_01_06/190.jpg\n",
      "File created: C:/Users/jjudge3/Desktop/Data/mm_full_pipeline_targets/Anna-NBQX/07-25-24/selected_zda//analysis01_01_06/194.jpg\n",
      "File created: C:/Users/jjudge3/Desktop/Data/mm_full_pipeline_targets/Anna-NBQX/07-25-24/selected_zda//analysis01_01_06/198.jpg\n",
      "File created: C:/Users/jjudge3/Desktop/Data/mm_full_pipeline_targets/Anna-NBQX/07-25-24/selected_zda//analysis01_01_06/202.jpg\n",
      "File created: C:/Users/jjudge3/Desktop/Data/mm_full_pipeline_targets/Anna-NBQX/07-25-24/selected_zda//analysis01_01_06/206.jpg\n",
      "File created: C:/Users/jjudge3/Desktop/Data/mm_full_pipeline_targets/Anna-NBQX/07-25-24/selected_zda//analysis01_01_06/210.jpg\n",
      "File created: C:/Users/jjudge3/Desktop/Data/mm_full_pipeline_targets/Anna-NBQX/07-25-24/selected_zda//analysis01_01_06/214.jpg\n",
      "File created: C:/Users/jjudge3/Desktop/Data/mm_full_pipeline_targets/Anna-NBQX/07-25-24/selected_zda//analysis01_01_06/218.jpg\n",
      "File created: C:/Users/jjudge3/Desktop/Data/mm_full_pipeline_targets/Anna-NBQX/07-25-24/selected_zda//analysis01_01_06/222.jpg\n",
      "File created: C:/Users/jjudge3/Desktop/Data/mm_full_pipeline_targets/Anna-NBQX/07-25-24/selected_zda//analysis01_01_06/226.jpg\n",
      "File created: C:/Users/jjudge3/Desktop/Data/mm_full_pipeline_targets/Anna-NBQX/07-25-24/selected_zda//analysis01_01_06/230.jpg\n",
      "File created: C:/Users/jjudge3/Desktop/Data/mm_full_pipeline_targets/Anna-NBQX/07-25-24/selected_zda//analysis01_01_06/234.jpg\n",
      "File created: C:/Users/jjudge3/Desktop/Data/mm_full_pipeline_targets/Anna-NBQX/07-25-24/selected_zda//analysis01_01_06/238.jpg\n",
      "File created: C:/Users/jjudge3/Desktop/Data/mm_full_pipeline_targets/Anna-NBQX/07-25-24/selected_zda//analysis01_01_06/242.jpg\n",
      "File created: C:/Users/jjudge3/Desktop/Data/mm_full_pipeline_targets/Anna-NBQX/07-25-24/selected_zda//analysis01_01_06/246.jpg\n",
      "File created: C:/Users/jjudge3/Desktop/Data/mm_full_pipeline_targets/Anna-NBQX/07-25-24/selected_zda//analysis01_01_06/250.jpg\n",
      "File created: C:/Users/jjudge3/Desktop/Data/mm_full_pipeline_targets/Anna-NBQX/07-25-24/selected_zda//analysis01_01_06/254.jpg\n",
      "File created: C:/Users/jjudge3/Desktop/Data/mm_full_pipeline_targets/Anna-NBQX/07-25-24/selected_zda//analysis01_01_06/258.jpg\n",
      "File created: C:/Users/jjudge3/Desktop/Data/mm_full_pipeline_targets/Anna-NBQX/07-25-24/selected_zda//analysis01_01_06/262.jpg\n",
      "File created: C:/Users/jjudge3/Desktop/Data/mm_full_pipeline_targets/Anna-NBQX/07-25-24/selected_zda//analysis01_01_06/266.jpg\n",
      "File created: C:/Users/jjudge3/Desktop/Data/mm_full_pipeline_targets/Anna-NBQX/07-25-24/selected_zda//analysis01_01_06/270.jpg\n",
      "File created: C:/Users/jjudge3/Desktop/Data/mm_full_pipeline_targets/Anna-NBQX/07-25-24/selected_zda//analysis01_01_06/274.jpg\n",
      "File created: C:/Users/jjudge3/Desktop/Data/mm_full_pipeline_targets/Anna-NBQX/07-25-24/selected_zda//analysis01_01_06/278.jpg\n",
      "File created: C:/Users/jjudge3/Desktop/Data/mm_full_pipeline_targets/Anna-NBQX/07-25-24/selected_zda//analysis01_01_06/282.jpg\n",
      "File created: C:/Users/jjudge3/Desktop/Data/mm_full_pipeline_targets/Anna-NBQX/07-25-24/selected_zda//analysis01_01_06/286.jpg\n",
      "File created: C:/Users/jjudge3/Desktop/Data/mm_full_pipeline_targets/Anna-NBQX/07-25-24/selected_zda//analysis01_01_06/290.jpg\n",
      "CREATED MOVIE: 01_01_06movie.gif\n",
      "02_01_01\n",
      "\n",
      "\n",
      "Opening 02_01_01.zda\n",
      "Saved intermed_snr_df file: C:/Users/jjudge3/Desktop/Data/mm_full_pipeline_targets/Anna-NBQX/07-25-24/selected_zda//Data.dat\n",
      "Moved color upper bound from 29.78 to 33.49\n",
      "File created: C:/Users/jjudge3/Desktop/Data/mm_full_pipeline_targets/Anna-NBQX/07-25-24/selected_zda//analysis02_01_01/130.jpg\n",
      "File created: C:/Users/jjudge3/Desktop/Data/mm_full_pipeline_targets/Anna-NBQX/07-25-24/selected_zda//analysis02_01_01/134.jpg\n",
      "File created: C:/Users/jjudge3/Desktop/Data/mm_full_pipeline_targets/Anna-NBQX/07-25-24/selected_zda//analysis02_01_01/138.jpg\n",
      "File created: C:/Users/jjudge3/Desktop/Data/mm_full_pipeline_targets/Anna-NBQX/07-25-24/selected_zda//analysis02_01_01/142.jpg\n",
      "File created: C:/Users/jjudge3/Desktop/Data/mm_full_pipeline_targets/Anna-NBQX/07-25-24/selected_zda//analysis02_01_01/146.jpg\n",
      "File created: C:/Users/jjudge3/Desktop/Data/mm_full_pipeline_targets/Anna-NBQX/07-25-24/selected_zda//analysis02_01_01/150.jpg\n",
      "File created: C:/Users/jjudge3/Desktop/Data/mm_full_pipeline_targets/Anna-NBQX/07-25-24/selected_zda//analysis02_01_01/154.jpg\n",
      "File created: C:/Users/jjudge3/Desktop/Data/mm_full_pipeline_targets/Anna-NBQX/07-25-24/selected_zda//analysis02_01_01/158.jpg\n",
      "File created: C:/Users/jjudge3/Desktop/Data/mm_full_pipeline_targets/Anna-NBQX/07-25-24/selected_zda//analysis02_01_01/162.jpg\n",
      "File created: C:/Users/jjudge3/Desktop/Data/mm_full_pipeline_targets/Anna-NBQX/07-25-24/selected_zda//analysis02_01_01/166.jpg\n",
      "File created: C:/Users/jjudge3/Desktop/Data/mm_full_pipeline_targets/Anna-NBQX/07-25-24/selected_zda//analysis02_01_01/170.jpg\n",
      "File created: C:/Users/jjudge3/Desktop/Data/mm_full_pipeline_targets/Anna-NBQX/07-25-24/selected_zda//analysis02_01_01/174.jpg\n",
      "File created: C:/Users/jjudge3/Desktop/Data/mm_full_pipeline_targets/Anna-NBQX/07-25-24/selected_zda//analysis02_01_01/178.jpg\n",
      "File created: C:/Users/jjudge3/Desktop/Data/mm_full_pipeline_targets/Anna-NBQX/07-25-24/selected_zda//analysis02_01_01/182.jpg\n",
      "File created: C:/Users/jjudge3/Desktop/Data/mm_full_pipeline_targets/Anna-NBQX/07-25-24/selected_zda//analysis02_01_01/186.jpg\n",
      "File created: C:/Users/jjudge3/Desktop/Data/mm_full_pipeline_targets/Anna-NBQX/07-25-24/selected_zda//analysis02_01_01/190.jpg\n",
      "File created: C:/Users/jjudge3/Desktop/Data/mm_full_pipeline_targets/Anna-NBQX/07-25-24/selected_zda//analysis02_01_01/194.jpg\n",
      "File created: C:/Users/jjudge3/Desktop/Data/mm_full_pipeline_targets/Anna-NBQX/07-25-24/selected_zda//analysis02_01_01/198.jpg\n",
      "File created: C:/Users/jjudge3/Desktop/Data/mm_full_pipeline_targets/Anna-NBQX/07-25-24/selected_zda//analysis02_01_01/202.jpg\n",
      "File created: C:/Users/jjudge3/Desktop/Data/mm_full_pipeline_targets/Anna-NBQX/07-25-24/selected_zda//analysis02_01_01/206.jpg\n",
      "File created: C:/Users/jjudge3/Desktop/Data/mm_full_pipeline_targets/Anna-NBQX/07-25-24/selected_zda//analysis02_01_01/210.jpg\n",
      "File created: C:/Users/jjudge3/Desktop/Data/mm_full_pipeline_targets/Anna-NBQX/07-25-24/selected_zda//analysis02_01_01/214.jpg\n",
      "File created: C:/Users/jjudge3/Desktop/Data/mm_full_pipeline_targets/Anna-NBQX/07-25-24/selected_zda//analysis02_01_01/218.jpg\n",
      "File created: C:/Users/jjudge3/Desktop/Data/mm_full_pipeline_targets/Anna-NBQX/07-25-24/selected_zda//analysis02_01_01/222.jpg\n",
      "File created: C:/Users/jjudge3/Desktop/Data/mm_full_pipeline_targets/Anna-NBQX/07-25-24/selected_zda//analysis02_01_01/226.jpg\n",
      "File created: C:/Users/jjudge3/Desktop/Data/mm_full_pipeline_targets/Anna-NBQX/07-25-24/selected_zda//analysis02_01_01/230.jpg\n",
      "File created: C:/Users/jjudge3/Desktop/Data/mm_full_pipeline_targets/Anna-NBQX/07-25-24/selected_zda//analysis02_01_01/234.jpg\n",
      "File created: C:/Users/jjudge3/Desktop/Data/mm_full_pipeline_targets/Anna-NBQX/07-25-24/selected_zda//analysis02_01_01/238.jpg\n",
      "File created: C:/Users/jjudge3/Desktop/Data/mm_full_pipeline_targets/Anna-NBQX/07-25-24/selected_zda//analysis02_01_01/242.jpg\n",
      "File created: C:/Users/jjudge3/Desktop/Data/mm_full_pipeline_targets/Anna-NBQX/07-25-24/selected_zda//analysis02_01_01/246.jpg\n",
      "File created: C:/Users/jjudge3/Desktop/Data/mm_full_pipeline_targets/Anna-NBQX/07-25-24/selected_zda//analysis02_01_01/250.jpg\n",
      "File created: C:/Users/jjudge3/Desktop/Data/mm_full_pipeline_targets/Anna-NBQX/07-25-24/selected_zda//analysis02_01_01/254.jpg\n",
      "File created: C:/Users/jjudge3/Desktop/Data/mm_full_pipeline_targets/Anna-NBQX/07-25-24/selected_zda//analysis02_01_01/258.jpg\n",
      "File created: C:/Users/jjudge3/Desktop/Data/mm_full_pipeline_targets/Anna-NBQX/07-25-24/selected_zda//analysis02_01_01/262.jpg\n",
      "File created: C:/Users/jjudge3/Desktop/Data/mm_full_pipeline_targets/Anna-NBQX/07-25-24/selected_zda//analysis02_01_01/266.jpg\n",
      "File created: C:/Users/jjudge3/Desktop/Data/mm_full_pipeline_targets/Anna-NBQX/07-25-24/selected_zda//analysis02_01_01/270.jpg\n",
      "File created: C:/Users/jjudge3/Desktop/Data/mm_full_pipeline_targets/Anna-NBQX/07-25-24/selected_zda//analysis02_01_01/274.jpg\n",
      "File created: C:/Users/jjudge3/Desktop/Data/mm_full_pipeline_targets/Anna-NBQX/07-25-24/selected_zda//analysis02_01_01/278.jpg\n",
      "File created: C:/Users/jjudge3/Desktop/Data/mm_full_pipeline_targets/Anna-NBQX/07-25-24/selected_zda//analysis02_01_01/282.jpg\n",
      "File created: C:/Users/jjudge3/Desktop/Data/mm_full_pipeline_targets/Anna-NBQX/07-25-24/selected_zda//analysis02_01_01/286.jpg\n",
      "File created: C:/Users/jjudge3/Desktop/Data/mm_full_pipeline_targets/Anna-NBQX/07-25-24/selected_zda//analysis02_01_01/290.jpg\n",
      "CREATED MOVIE: 02_01_01movie.gif\n",
      "02_01_03\n",
      "\n",
      "\n",
      "Opening 02_01_03.zda\n",
      "Saved intermed_snr_df file: C:/Users/jjudge3/Desktop/Data/mm_full_pipeline_targets/Anna-NBQX/07-25-24/selected_zda//Data.dat\n",
      "Moved color upper bound from 33.49 to 27.88\n",
      "File created: C:/Users/jjudge3/Desktop/Data/mm_full_pipeline_targets/Anna-NBQX/07-25-24/selected_zda//analysis02_01_03/130.jpg\n",
      "File created: C:/Users/jjudge3/Desktop/Data/mm_full_pipeline_targets/Anna-NBQX/07-25-24/selected_zda//analysis02_01_03/134.jpg\n",
      "File created: C:/Users/jjudge3/Desktop/Data/mm_full_pipeline_targets/Anna-NBQX/07-25-24/selected_zda//analysis02_01_03/138.jpg\n",
      "File created: C:/Users/jjudge3/Desktop/Data/mm_full_pipeline_targets/Anna-NBQX/07-25-24/selected_zda//analysis02_01_03/142.jpg\n",
      "File created: C:/Users/jjudge3/Desktop/Data/mm_full_pipeline_targets/Anna-NBQX/07-25-24/selected_zda//analysis02_01_03/146.jpg\n",
      "File created: C:/Users/jjudge3/Desktop/Data/mm_full_pipeline_targets/Anna-NBQX/07-25-24/selected_zda//analysis02_01_03/150.jpg\n",
      "File created: C:/Users/jjudge3/Desktop/Data/mm_full_pipeline_targets/Anna-NBQX/07-25-24/selected_zda//analysis02_01_03/154.jpg\n",
      "File created: C:/Users/jjudge3/Desktop/Data/mm_full_pipeline_targets/Anna-NBQX/07-25-24/selected_zda//analysis02_01_03/158.jpg\n",
      "File created: C:/Users/jjudge3/Desktop/Data/mm_full_pipeline_targets/Anna-NBQX/07-25-24/selected_zda//analysis02_01_03/162.jpg\n",
      "File created: C:/Users/jjudge3/Desktop/Data/mm_full_pipeline_targets/Anna-NBQX/07-25-24/selected_zda//analysis02_01_03/166.jpg\n",
      "File created: C:/Users/jjudge3/Desktop/Data/mm_full_pipeline_targets/Anna-NBQX/07-25-24/selected_zda//analysis02_01_03/170.jpg\n",
      "File created: C:/Users/jjudge3/Desktop/Data/mm_full_pipeline_targets/Anna-NBQX/07-25-24/selected_zda//analysis02_01_03/174.jpg\n",
      "File created: C:/Users/jjudge3/Desktop/Data/mm_full_pipeline_targets/Anna-NBQX/07-25-24/selected_zda//analysis02_01_03/178.jpg\n",
      "File created: C:/Users/jjudge3/Desktop/Data/mm_full_pipeline_targets/Anna-NBQX/07-25-24/selected_zda//analysis02_01_03/182.jpg\n",
      "File created: C:/Users/jjudge3/Desktop/Data/mm_full_pipeline_targets/Anna-NBQX/07-25-24/selected_zda//analysis02_01_03/186.jpg\n",
      "File created: C:/Users/jjudge3/Desktop/Data/mm_full_pipeline_targets/Anna-NBQX/07-25-24/selected_zda//analysis02_01_03/190.jpg\n",
      "File created: C:/Users/jjudge3/Desktop/Data/mm_full_pipeline_targets/Anna-NBQX/07-25-24/selected_zda//analysis02_01_03/194.jpg\n",
      "File created: C:/Users/jjudge3/Desktop/Data/mm_full_pipeline_targets/Anna-NBQX/07-25-24/selected_zda//analysis02_01_03/198.jpg\n",
      "File created: C:/Users/jjudge3/Desktop/Data/mm_full_pipeline_targets/Anna-NBQX/07-25-24/selected_zda//analysis02_01_03/202.jpg\n",
      "File created: C:/Users/jjudge3/Desktop/Data/mm_full_pipeline_targets/Anna-NBQX/07-25-24/selected_zda//analysis02_01_03/206.jpg\n",
      "File created: C:/Users/jjudge3/Desktop/Data/mm_full_pipeline_targets/Anna-NBQX/07-25-24/selected_zda//analysis02_01_03/210.jpg\n",
      "File created: C:/Users/jjudge3/Desktop/Data/mm_full_pipeline_targets/Anna-NBQX/07-25-24/selected_zda//analysis02_01_03/214.jpg\n",
      "File created: C:/Users/jjudge3/Desktop/Data/mm_full_pipeline_targets/Anna-NBQX/07-25-24/selected_zda//analysis02_01_03/218.jpg\n",
      "File created: C:/Users/jjudge3/Desktop/Data/mm_full_pipeline_targets/Anna-NBQX/07-25-24/selected_zda//analysis02_01_03/222.jpg\n",
      "File created: C:/Users/jjudge3/Desktop/Data/mm_full_pipeline_targets/Anna-NBQX/07-25-24/selected_zda//analysis02_01_03/226.jpg\n",
      "File created: C:/Users/jjudge3/Desktop/Data/mm_full_pipeline_targets/Anna-NBQX/07-25-24/selected_zda//analysis02_01_03/230.jpg\n",
      "File created: C:/Users/jjudge3/Desktop/Data/mm_full_pipeline_targets/Anna-NBQX/07-25-24/selected_zda//analysis02_01_03/234.jpg\n",
      "File created: C:/Users/jjudge3/Desktop/Data/mm_full_pipeline_targets/Anna-NBQX/07-25-24/selected_zda//analysis02_01_03/238.jpg\n",
      "File created: C:/Users/jjudge3/Desktop/Data/mm_full_pipeline_targets/Anna-NBQX/07-25-24/selected_zda//analysis02_01_03/242.jpg\n",
      "File created: C:/Users/jjudge3/Desktop/Data/mm_full_pipeline_targets/Anna-NBQX/07-25-24/selected_zda//analysis02_01_03/246.jpg\n",
      "File created: C:/Users/jjudge3/Desktop/Data/mm_full_pipeline_targets/Anna-NBQX/07-25-24/selected_zda//analysis02_01_03/250.jpg\n",
      "File created: C:/Users/jjudge3/Desktop/Data/mm_full_pipeline_targets/Anna-NBQX/07-25-24/selected_zda//analysis02_01_03/254.jpg\n",
      "File created: C:/Users/jjudge3/Desktop/Data/mm_full_pipeline_targets/Anna-NBQX/07-25-24/selected_zda//analysis02_01_03/258.jpg\n",
      "File created: C:/Users/jjudge3/Desktop/Data/mm_full_pipeline_targets/Anna-NBQX/07-25-24/selected_zda//analysis02_01_03/262.jpg\n",
      "File created: C:/Users/jjudge3/Desktop/Data/mm_full_pipeline_targets/Anna-NBQX/07-25-24/selected_zda//analysis02_01_03/266.jpg\n",
      "File created: C:/Users/jjudge3/Desktop/Data/mm_full_pipeline_targets/Anna-NBQX/07-25-24/selected_zda//analysis02_01_03/270.jpg\n",
      "File created: C:/Users/jjudge3/Desktop/Data/mm_full_pipeline_targets/Anna-NBQX/07-25-24/selected_zda//analysis02_01_03/274.jpg\n",
      "File created: C:/Users/jjudge3/Desktop/Data/mm_full_pipeline_targets/Anna-NBQX/07-25-24/selected_zda//analysis02_01_03/278.jpg\n",
      "File created: C:/Users/jjudge3/Desktop/Data/mm_full_pipeline_targets/Anna-NBQX/07-25-24/selected_zda//analysis02_01_03/282.jpg\n",
      "File created: C:/Users/jjudge3/Desktop/Data/mm_full_pipeline_targets/Anna-NBQX/07-25-24/selected_zda//analysis02_01_03/286.jpg\n",
      "File created: C:/Users/jjudge3/Desktop/Data/mm_full_pipeline_targets/Anna-NBQX/07-25-24/selected_zda//analysis02_01_03/290.jpg\n",
      "CREATED MOVIE: 02_01_03movie.gif\n"
     ]
    }
   ],
   "source": [
    "current_color_bound_setting = 1.0\n",
    "for subdir, dirs, files in os.walk(data_dir):\n",
    "    if 'notUsable' in subdir:\n",
    "        continue\n",
    "    if 'hidden' in subdir:\n",
    "        continue\n",
    "    if 'dic' in dirs and 'selected_zda' in dirs:\n",
    "        print(subdir)\n",
    "        dic_dir = subdir + \"/dic/\"\n",
    "        selected_zda_dir = subdir + \"/selected_zda/\"\n",
    "\n",
    "        for zda_file in os.listdir(selected_zda_dir):\n",
    "            if zda_file.endswith('.zda'):\n",
    "\n",
    "                rec_id = zda_file.split('.')[0]\n",
    "                print(rec_id)\n",
    "                # movie dir\n",
    "                output_dir = selected_zda_dir + \"/analysis\" + rec_id + \"/\"\n",
    "                try:\n",
    "                    os.makedirs(output_dir)\n",
    "                except Exception as e:\n",
    "                    pass\n",
    "\n",
    "                # determine if we are even missing any jpg'd frames\n",
    "                need_to_open_zda = True\n",
    "                for frame in range(start_frame, start_frame + movie_length, frame_step_size):\n",
    "                    filename = output_dir + str(frame) + \".jpg\"\n",
    "                    if not os.path.exists(filename):\n",
    "                        need_to_open_zda = True\n",
    "                        break\n",
    "                if not need_to_open_zda and not replace_existing_frame_pngs:\n",
    "                    continue\n",
    "\n",
    "                recording_max_snr = 3.0  # gets changed\n",
    "\n",
    "                if not disable_photoZ_interact:\n",
    "                    aPhz = AutoPhotoZ(data_dir=selected_zda_dir)\n",
    "                    # open the PhotoZ file\n",
    "                    aPhz.select_PhotoZ()\n",
    "\n",
    "                    print(\"\\n\\nOpening\", zda_file)\n",
    "                    aPhz.open_zda_file(selected_zda_dir + \"/\" + zda_file)\n",
    "                    time.sleep(13)\n",
    "\n",
    "                    # estimate the SNR max across all frames\n",
    "                    aPhz.set_measure_window(start_frame, movie_length, sleep_time_window_change=17)\n",
    "                    filename = aPhz.save_background()\n",
    "                    print(\"Saved intermed_snr_df file:\", filename)\n",
    "                    if filename is not None:  # otherwise, sticks with default rec max\n",
    "\n",
    "                        # open Data.dat and read in the array max\n",
    "                        intermed_snr_df = pd.read_csv(filename, \n",
    "                                                      sep='\\t', \n",
    "                                                      header=None, \n",
    "                                                      names=['Index',  'Values'])\n",
    "                        recording_max_snr = intermed_snr_df['Values'].max()\n",
    "\n",
    "                        recording_max_snr *= 1.05  # 5% higher for headroom\n",
    "                        recording_max_snr = round(recording_max_snr, 2)\n",
    "                        if clean_scratch_files:\n",
    "                            try:\n",
    "                                os.remove(filename)\n",
    "                            except Exception as e:\n",
    "                                print(\"Could not remove\", filename)\n",
    "                                print(e)\n",
    "\n",
    "                    # set the normalization to be consistent across entire video\n",
    "                    aPhz.set_color_upper_bound(recording_max_snr, current_color_bound_setting)\n",
    "                    print(\"Moved color upper bound from\", current_color_bound_setting, \"to\", recording_max_snr)\n",
    "                    current_color_bound_setting = recording_max_snr\n",
    "\n",
    "                    # set measure window width to 1\n",
    "                    aPhz.set_measure_window(None, frame_step_size, sleep_time_window_change=17)\n",
    "\n",
    "                ##### Get frame annotation: layer and stim markings, and store #####\n",
    "\n",
    "                # file conventions across\n",
    "                electrode_file = output_dir + \"/electrode.dat\"\n",
    "                corners_layer_file = output_dir + \"/corners_layer.dat\"\n",
    "                corners_barrel_file = output_dir + \"/corners_barrel.dat\"\n",
    "                annotations_enabled = all([os.path.exists(f) for f in [electrode_file, \n",
    "                                                                       corners_layer_file, \n",
    "                                                                       corners_barrel_file]])\n",
    "\n",
    "                def array_point_to_image_pixel(arr_pt):\n",
    "                    x_arr, y_arr = arr_pt\n",
    "                    return [image_border_width + image_scaling * x_arr, \n",
    "                            image_border_width + image_scaling * y_arr]\n",
    "\n",
    "                if annotations_enabled:\n",
    "                    # read in electrode location\n",
    "                    with open(electrode_file, 'r') as f:\n",
    "                        lines = f.readlines()\n",
    "                    stim_pt = int(lines[-1]) # last line is always electrode location\n",
    "                    aux_obj = LaminarROI([stim_pt]).get_points()\n",
    "                    stim_pt = aux_obj[0]  # should be a list of len 2, representing px location [x, y]\n",
    "                    print(\"Stim point:\", stim_pt)\n",
    "                    stim_img_px = array_point_to_image_pixel(stim_pt)\n",
    "                    stim_xy = (stim_img_px[0] - electrode_marker_radius, \n",
    "                               stim_img_px[1] - electrode_marker_radius, \n",
    "                               stim_img_px[0] + electrode_marker_radius, \n",
    "                               stim_img_px[1] + electrode_marker_radius)\n",
    "                    # read in corners files\n",
    "                    la_corners = {corners_layer_file: {},\n",
    "                                  corners_barrel_file: {}}\n",
    "                    for la_file in [corners_layer_file, corners_barrel_file]:\n",
    "                        with open(la_file, 'r') as f:\n",
    "                            lines = f.readlines() \n",
    "                        corners = [int(x) for x in lines[4:]] # the last 4 lines are diode numbers of corners\n",
    "                        layer_axes = LayerAxes(corners, obey_initial_order=True)\n",
    "                        laminar_axis, laminar_axis_2 = layer_axes.get_layer_axes()\n",
    "                        print(\"laminar axis unit vectors:\", laminar_axis.get_unit_vector(), \n",
    "                              laminar_axis_2.get_unit_vector())\n",
    "\n",
    "                        end = array_point_to_image_pixel(laminar_axis.get_end_point())\n",
    "                        end2 = array_point_to_image_pixel(laminar_axis_2.get_end_point())\n",
    "                        start = array_point_to_image_pixel(laminar_axis.get_start_point())\n",
    "                        start2 = array_point_to_image_pixel(laminar_axis_2.get_start_point())\n",
    "                        la_corners[la_file][\"line_loc\"] = [start + end, start2 + end2]\n",
    "                        la_corners[la_file][\"text_loc\"] = (int((end[0] + end2[0]) / 2), \n",
    "                                                           int((end[1] + end2[1]) / 2))\n",
    "\n",
    "\n",
    "                images = []\n",
    "                img_filenames = []\n",
    "                for frame in range(start_frame, start_frame + movie_length, frame_step_size):\n",
    "                    filename = output_dir + str(frame) + \".jpg\"\n",
    "                    if replace_existing_frame_pngs or not os.path.exists(filename):\n",
    "                        # change frame\n",
    "                        if not disable_photoZ_interact:\n",
    "                            aPhz.set_measure_window(frame, None)\n",
    "\n",
    "                            # export this frame\n",
    "                            aPhz.save_map_jpeg(filename)\n",
    "                            print(\"File created:\", filename)\n",
    "\n",
    "                    if annotations_enabled:\n",
    "                        # draw electrode location on image <filename>\n",
    "                        image = Image.open(filename)\n",
    "                        draw = ImageDraw.Draw(image)\n",
    "                        draw.ellipse(stim_xy, outline='red', width=2)\n",
    "                        # read in corners files\n",
    "                        for la_file in [corners_layer_file, corners_barrel_file]:\n",
    "                            draw.line(la_corners[la_file][\"line_loc\"][0], fill='white', width=2)\n",
    "                            draw.line(la_corners[la_file][\"line_loc\"][1], fill='white', width=2)\n",
    "                            if la_file == corners_layer_file:\n",
    "                                draw.text(la_corners[la_file][\"text_loc\"], \"L4\", anchor=\"ms\")\n",
    "                        # PIL image write back\n",
    "                        image.save(filename)\n",
    "\n",
    "                    try:\n",
    "                        images.append(imageio.imread(filename))\n",
    "                        img_filenames.append(filename)\n",
    "                    except Exception as e:\n",
    "                        pass\n",
    "\n",
    "                # create gif\n",
    "                created_movie = False\n",
    "                try:\n",
    "                    imageio.mimsave(output_dir + rec_id + 'movie.gif', images)\n",
    "                    print(\"CREATED MOVIE:\", rec_id + 'movie.gif')\n",
    "                    created_movie = True\n",
    "                    if clean_scratch_files:\n",
    "                        for img_file in img_filenames:\n",
    "                            os.remove(img_file)\n",
    "                except Exception as e:\n",
    "                    if not created_movie:\n",
    "                        print(\"Not creating movie for \" + rec_id)\n",
    "                    print(e)"
   ]
  },
  {
   "cell_type": "markdown",
   "id": "9a35a1b3",
   "metadata": {},
   "source": [
    "## "
   ]
  }
 ],
 "metadata": {
  "kernelspec": {
   "display_name": "Python 3",
   "language": "python",
   "name": "python3"
  },
  "language_info": {
   "codemirror_mode": {
    "name": "ipython",
    "version": 3
   },
   "file_extension": ".py",
   "mimetype": "text/x-python",
   "name": "python",
   "nbconvert_exporter": "python",
   "pygments_lexer": "ipython3",
   "version": "3.8.8"
  }
 },
 "nbformat": 4,
 "nbformat_minor": 5
}