diff --git a/covid_spike_classification/core.py b/covid_spike_classification/core.py index 9cf8202..d570e0d 100644 --- a/covid_spike_classification/core.py +++ b/covid_spike_classification/core.py @@ -30,6 +30,7 @@ "E484Q": "NC_045512:23012-23014", "F490R": "NC_045512:23030-23032", "Q493K": "NC_045512:23039-23041", + "Q493R": "NC_045512:23039-23041", "G496S": "NC_045512:23048-23050", "Q498R": "NC_045512:23054-23056", "N501Y": "NC_045512:23063-23065", diff --git a/tests/data/Q493R.fasta b/tests/data/Q493R.fasta new file mode 100644 index 0000000..fbfe7e5 --- /dev/null +++ b/tests/data/Q493R.fasta @@ -0,0 +1,19 @@ +>Q493R +GGGCAAACTGGAAAGATTGCTGATTATAATTATAAATTACCAGATGATTTTACAGGCTGC +GTTATAGCTTGGAATTCTAACAATCTTGATTCTAAGGTTGGTGGTAATTATAATTACCTG +TATAGATTGTTTAGGAAGTCTAATCTCAAACCTTTTGAGAGAGATATTTCAACTGAAATC +TATCAGGCCGGTAGCACACCTTGTAATGGTGTTGAAGGTTTTAATTGTTACTTTCCTTTA +CGATCATATGGTTTCCAACCCACTAATGGTGTTGGTTACCAACCATACAGAGTAGTAGTA +CTTTCTTTTGAACTTCTACATGCACCAGCAACTGTTTGTGGACCTAAAAAGTCTACTAAT +TTGGTTAAAAACAAATGTGTCAATTTCAACTTCAATGGTTTAACAGGCACAGGTGTTCTT +ACTGAGTCTAACAAAAAGTTTCTGCCTTTCCAACAATTTGGCAGAGACATTGCTGACACT +ACTGATGCTGTCCGTGATCCACAGACACTTGAGATTCTTGACATTACACCATGTTCTTTT +GGTGGTGTCAGTGTTATAACACCAGGAACAAATACTTCTAACCAGGTTGCTGTTCTTTAT +CAGGATGTTAACTGCACAGAAGTCCCTGTTGCTATTCATGCAGATCAACTTACTCCTACT +TGGCGTGTTTATTCTACAGGTTCTAATGTTTTTCAAACACGTGCAGGCTGTTTAATAGGG +GCTGAACATGTCAACAACTCATATGAGTGTGACATACCCATTGGTGCAGGTATATGCGCT +AGTTATCAGACTCAGACTAATTCTCCTCGGCGGGCACGTAGTGTAGCTAGTCAATCCATC +ATTGCCTACACTATGTCACTTGGTGCAGAAAATTCAGTTGCTTACTCTAATAACTCTATT +GCCATACCCACAAATTTTACTATTAGTGTTACCACAGAAATTCTACCAGTGTCTATGACC +AAGACATCAGTAGATTGTACAATGTACATTTGTGGTGATTCAACTGAATGCAGCAATCTT +TTGTTGCAATATGGCAGTTTTTGTACACA diff --git a/tests/data/generate_test_data.sh b/tests/data/generate_test_data.sh index 5a8e5e4..20c394e 100755 --- a/tests/data/generate_test_data.sh +++ b/tests/data/generate_test_data.sh @@ -44,6 +44,8 @@ generate E484Q 23012:C generate F490R 23030:C 23031:G #Q493K generate Q493K 23039:A +#Q493R +generate Q493R 23040:G #G496S generate G496S 23048:A #Q498R @@ -80,4 +82,3 @@ generate A701V 23664:T generate T716I 23709:T #T732A generate T732A 23756:G -