diff --git a/_data/publications/publications.csv b/_data/publications/publications.csv index 26dfaef..58a9e76 100644 --- a/_data/publications/publications.csv +++ b/_data/publications/publications.csv @@ -1,8 +1,14 @@ pmid,pmcid,doi,title,authors,year,month,day,journal,volume,issue,pages +39420185,PMC11487139,10.1038/s41467-024-53148-x,Multimodal gradients of basal forebrain connectivity across the neocortex,"['Chakraborty S', 'Haast RAM', 'Onuska KM', 'Kanel P', 'Prado MAM', 'Prado VF', 'Khan AR', 'Schmitz TW']",2024,10,18,Nat Commun,15,1,8990 +39229062,PMC11370384,10.1101/2024.08.19.608590,The developing hippocampus: Microstructural evolution through childhood and adolescence,"['Karat BG', 'Genc S', 'Raven EP', 'Palombo M', 'Khan AR', 'Jones DK']",2024,8,19,bioRxiv,,, +38822981,,10.1007/s11548-024-03186-z,MRI-degad: toward accurate conversion of gadolinium-enhanced T1w MRIs to non-contrast-enhanced scans using CNNs,"['Ogunsanya F', 'Taha A', 'Gilmore G', 'Kai J', 'Kuehn T', 'Thurairajah A', 'Tenorio MC', 'Khan AR', 'Lau JC']",2024,7,1,Int J Comput Assist Radiol Surg,19,7,1469-1472 +38951528,PMC11217278,10.1038/s41531-024-00731-0,Increased mean diffusivity of the caudal motor SNc identifies patients with REM sleep behaviour disorder and Parkinson's disease,"['Alushaj E', 'Hemachandra D', 'Ganjavi H', 'Seergobin KN', 'Sharma M', 'Kashgari A', 'Barr J', 'Reisman W', 'Khan AR', 'MacDonald PA']",2024,6,29,NPJ Parkinsons Dis,10,1,128 +38839341,PMC11154849,10.1523/JNEUROSCI.1705-23.2024,Diffusion MRI of the Hippocampus,"['Karat BG', 'Kohler S', 'Khan AR']",2024,6,5,J Neurosci,44,23, 38446857,,10.1073/pnas.2310044121,"Insights into hippocampal perfusion using high-resolution, multi-modal 7T MRI","['Haast RAM', 'Kashyap S', 'Ivanov D', 'Yousif MD', 'DeKraker J', 'Poser BA', 'Khan AR']",2024,3,12,Proc Natl Acad Sci U S A,121,11.0,e2310044121 38377722,,10.1016/j.nicl.2024.103577,Increased iron in the substantia nigra pars compacta identifies patients with early Parkinson'sdisease: A 3T and 7T MRI study,"['Alushaj E', 'Handfield-Jones N', 'Kuurstra A', 'Morava A', 'Menon RS', 'Owen AM', 'Sharma M', 'Khan AR', 'MacDonald PA']",2024,2,17,Neuroimage Clin,41,,103577 38263439,PMC10806185,10.1038/s41598-024-52613-3,Comparison between a deep-learning and a pixel-based approach for the automated quantification of HIV target cells in foreskin tissue,"['Shao Z', 'Buchanan LB', 'Zuanazzi D', 'Khan YN', 'Khan AR', 'Prodger JL']",2024,1,23,Sci Rep,14,1.0,1985 38235918,,10.1002/jor.25785,Assessing brain integrity in patients with long-term and well-functioning metal-based hip implants,"['Taleb S', 'Varela-Mattatall G', 'Allen A', 'Haast R', 'Khan AR', 'Kalia V', 'Howard JL', 'MacDonald SJ', 'Menon RS', 'Lanting BA', 'Teeter MG']",2024,1,18,J Orthop Res,,, +39144115,PMC11207789,10.1093/schizbullopen/sgae010,Cortical Network Disruption Is Minimal in Early Stages of Psychosis,"['Van Dyken PC', 'MacKinley M', 'Khan AR', 'Palaniyappan L']",2024,1,1,Schizophr Bull Open,5,1,sgae010 37956092,PMC10642966,10.7554/eLife.88404,Evaluation of surface-based hippocampal registration using ground-truth subfield definitions,"['DeKraker J', 'Palomero-Gallagher N', 'Kedo O', 'Ladbon-Bernasconi N', 'Muenzing SEA', 'Axer M', 'Amunts K', 'Khan AR', 'Bernhardt BC', 'Evans AC']",2023,11,13,Elife,12,, 37864501,,10.1111/jnc.15990,Focal acetylcholinergic modulation of the human midcingulo-insular network during attention: Meta-analytic neuroimaging and behavioral evidence,"['Chakraborty S', 'Lee SK', 'Arnold SM', 'Haast RAM', 'Khan AR', 'Schmitz TW']",2023,10,21,J Neurochem,,, 37663773,PMC10474320,10.1016/j.dib.2023.109513,A population-averaged structural connectomic brain atlas dataset from 422 HCP-aging subjects,"['Xiao Y', 'Gilmore G', 'Kai J', 'Lau JC', 'Peters T', 'Khan AR']",2023,10,1,Data Brief,50,,109513 diff --git a/get_publications.ipynb b/get_publications.ipynb index 5d5ae59..7fadaf5 100644 --- a/get_publications.ipynb +++ b/get_publications.ipynb @@ -5,10 +5,10 @@ "id": "74557173", "metadata": { "papermill": { - "duration": 0.002403, - "end_time": "2024-06-01T05:12:46.553604", + "duration": 0.002338, + "end_time": "2025-01-01T05:13:32.953738", "exception": false, - "start_time": "2024-06-01T05:12:46.551201", + "start_time": "2025-01-01T05:13:32.951400", "status": "completed" }, "tags": [] @@ -37,16 +37,16 @@ "id": "e22f3858", "metadata": { "execution": { - "iopub.execute_input": "2024-06-01T05:12:46.558800Z", - "iopub.status.busy": "2024-06-01T05:12:46.558233Z", - "iopub.status.idle": "2024-06-01T05:12:47.785996Z", - "shell.execute_reply": "2024-06-01T05:12:47.785266Z" + "iopub.execute_input": "2025-01-01T05:13:32.958249Z", + "iopub.status.busy": "2025-01-01T05:13:32.958055Z", + "iopub.status.idle": "2025-01-01T05:13:34.105170Z", + "shell.execute_reply": "2025-01-01T05:13:34.104379Z" }, "papermill": { - "duration": 1.232276, - "end_time": "2024-06-01T05:12:47.787812", + "duration": 1.151355, + "end_time": "2025-01-01T05:13:34.106938", "exception": false, - "start_time": "2024-06-01T05:12:46.555536", + "start_time": "2025-01-01T05:13:32.955583", "status": "completed" }, "tags": [] @@ -67,10 +67,10 @@ "id": "d526e19d", "metadata": { "papermill": { - "duration": 0.001733, - "end_time": "2024-06-01T05:12:47.791557", + "duration": 0.014956, + "end_time": "2025-01-01T05:13:34.124218", "exception": false, - "start_time": "2024-06-01T05:12:47.789824", + "start_time": "2025-01-01T05:13:34.109262", "status": "completed" }, "tags": [] @@ -85,16 +85,16 @@ "id": "5d9095c2", "metadata": { "execution": { - "iopub.execute_input": "2024-06-01T05:12:47.796168Z", - "iopub.status.busy": "2024-06-01T05:12:47.795696Z", - "iopub.status.idle": "2024-06-01T05:12:47.802685Z", - "shell.execute_reply": "2024-06-01T05:12:47.802031Z" + "iopub.execute_input": "2025-01-01T05:13:34.152400Z", + "iopub.status.busy": "2025-01-01T05:13:34.151746Z", + "iopub.status.idle": "2025-01-01T05:13:34.160162Z", + "shell.execute_reply": "2025-01-01T05:13:34.159462Z" }, "papermill": { - "duration": 0.011015, - "end_time": "2024-06-01T05:12:47.804184", + "duration": 0.032241, + "end_time": "2025-01-01T05:13:34.161505", "exception": false, - "start_time": "2024-06-01T05:12:47.793169", + "start_time": "2025-01-01T05:13:34.129264", "status": "completed" }, "tags": [] @@ -116,10 +116,10 @@ "id": "da017a87", "metadata": { "papermill": { - "duration": 0.001644, - "end_time": "2024-06-01T05:12:47.807482", + "duration": 0.048017, + "end_time": "2025-01-01T05:13:34.240785", "exception": false, - "start_time": "2024-06-01T05:12:47.805838", + "start_time": "2025-01-01T05:13:34.192768", "status": "completed" }, "tags": [] @@ -134,16 +134,16 @@ "id": "700613de", "metadata": { "execution": { - "iopub.execute_input": "2024-06-01T05:12:47.811879Z", - "iopub.status.busy": "2024-06-01T05:12:47.811531Z", - "iopub.status.idle": "2024-06-01T05:12:47.815022Z", - "shell.execute_reply": "2024-06-01T05:12:47.814307Z" + "iopub.execute_input": "2025-01-01T05:13:34.246586Z", + "iopub.status.busy": "2025-01-01T05:13:34.246108Z", + "iopub.status.idle": "2025-01-01T05:13:34.250265Z", + "shell.execute_reply": "2025-01-01T05:13:34.249595Z" }, "papermill": { - "duration": 0.007234, - "end_time": "2024-06-01T05:12:47.816359", + "duration": 0.008481, + "end_time": "2025-01-01T05:13:34.251685", "exception": false, - "start_time": "2024-06-01T05:12:47.809125", + "start_time": "2025-01-01T05:13:34.243204", "status": "completed" }, "tags": [] @@ -165,16 +165,16 @@ "id": "2ad1de07", "metadata": { "execution": { - "iopub.execute_input": "2024-06-01T05:12:47.820796Z", - "iopub.status.busy": "2024-06-01T05:12:47.820442Z", - "iopub.status.idle": "2024-06-01T05:12:50.394770Z", - "shell.execute_reply": "2024-06-01T05:12:50.394051Z" + "iopub.execute_input": "2025-01-01T05:13:34.257121Z", + "iopub.status.busy": "2025-01-01T05:13:34.256676Z", + "iopub.status.idle": "2025-01-01T05:13:36.269129Z", + "shell.execute_reply": "2025-01-01T05:13:36.268466Z" }, "papermill": { - "duration": 2.578186, - "end_time": "2024-06-01T05:12:50.396207", + "duration": 2.016703, + "end_time": "2025-01-01T05:13:36.270587", "exception": false, - "start_time": "2024-06-01T05:12:47.818021", + "start_time": "2025-01-01T05:13:34.253884", "status": "completed" }, "scrolled": true, @@ -187,7 +187,7 @@ "text": [ "Total number of publications containing \"Khan AR\"[AUTH] AND (\"2015/01/01\"[PDAT] : \"3000/12/31\"[PDAT]) AND\n", " (\"Western University\"[AFFL] OR \"University of Western Ontario\"[AFFL] OR\n", - " \"Brain and Mind Institute\"[AFFL] OR \"Robarts Research Institute\"[AFFL]): 77\n" + " \"Brain and Mind Institute\"[AFFL] OR \"Robarts Research Institute\"[AFFL]): 83\n" ] }, { @@ -201,7 +201,7 @@ "name": "stderr", "output_type": "stream", "text": [ - "/tmp/ipykernel_1999/990535001.py:54: FutureWarning: The frame.append method is deprecated and will be removed from pandas in a future version. Use pandas.concat instead.\n", + "/tmp/ipykernel_1967/990535001.py:54: FutureWarning: The frame.append method is deprecated and will be removed from pandas in a future version. Use pandas.concat instead.\n", " df = df_old.append(new_pubs)\n" ] } @@ -275,16 +275,16 @@ "id": "70df731e", "metadata": { "execution": { - "iopub.execute_input": "2024-06-01T05:12:50.401275Z", - "iopub.status.busy": "2024-06-01T05:12:50.401038Z", - "iopub.status.idle": "2024-06-01T05:12:50.407504Z", - "shell.execute_reply": "2024-06-01T05:12:50.406683Z" + "iopub.execute_input": "2025-01-01T05:13:36.275841Z", + "iopub.status.busy": "2025-01-01T05:13:36.275445Z", + "iopub.status.idle": "2025-01-01T05:13:36.282412Z", + "shell.execute_reply": "2025-01-01T05:13:36.281665Z" }, "papermill": { - "duration": 0.010465, - "end_time": "2024-06-01T05:12:50.408814", + "duration": 0.011021, + "end_time": "2025-01-01T05:13:36.283736", "exception": false, - "start_time": "2024-06-01T05:12:50.398349", + "start_time": "2025-01-01T05:13:36.272715", "status": "completed" }, "tags": [] @@ -294,10 +294,34 @@ "name": "stdout", "output_type": "stream", "text": [ - "71 total articles found.\n", - "0 new articles found.\n", + "77 total articles found.\n", + "6 new articles found.\n", "\n", - "New publications found:\n" + "New publications found:\n", + "Title: Multimodal gradients of basal forebrain connectivity across the neocortex (Nat Commun)\n", + "Authors: ['Chakraborty S', 'Haast RAM', 'Onuska KM', 'Kanel P', 'Prado MAM', 'Prado VF', 'Khan AR', 'Schmitz TW']\n", + "Journal (Date): Nat Commun (10/18/2024)\n", + "\n", + "Title: The developing hippocampus: Microstructural evolution through childhood and adolescence (bioRxiv)\n", + "Authors: ['Karat BG', 'Genc S', 'Raven EP', 'Palombo M', 'Khan AR', 'Jones DK']\n", + "Journal (Date): bioRxiv (8/19/2024)\n", + "\n", + "Title: Cortical Network Disruption Is Minimal in Early Stages of Psychosis (Schizophr Bull Open)\n", + "Authors: ['Van Dyken PC', 'MacKinley M', 'Khan AR', 'Palaniyappan L']\n", + "Journal (Date): Schizophr Bull Open (1/1/2024)\n", + "\n", + "Title: Increased mean diffusivity of the caudal motor SNc identifies patients with REM sleep behaviour disorder and Parkinson's disease (NPJ Parkinsons Dis)\n", + "Authors: ['Alushaj E', 'Hemachandra D', 'Ganjavi H', 'Seergobin KN', 'Sharma M', 'Kashgari A', 'Barr J', 'Reisman W', 'Khan AR', 'MacDonald PA']\n", + "Journal (Date): NPJ Parkinsons Dis (6/29/2024)\n", + "\n", + "Title: Diffusion MRI of the Hippocampus (J Neurosci)\n", + "Authors: ['Karat BG', 'Kohler S', 'Khan AR']\n", + "Journal (Date): J Neurosci (6/5/2024)\n", + "\n", + "Title: MRI-degad: toward accurate conversion of gadolinium-enhanced T1w MRIs to non-contrast-enhanced scans using CNNs (Int J Comput Assist Radiol Surg)\n", + "Authors: ['Ogunsanya F', 'Taha A', 'Gilmore G', 'Kai J', 'Kuehn T', 'Thurairajah A', 'Tenorio MC', 'Khan AR', 'Lau JC']\n", + "Journal (Date): Int J Comput Assist Radiol Surg (7/1/2024)\n", + "\n" ] } ], @@ -323,16 +347,16 @@ "id": "e76e9b21", "metadata": { "execution": { - "iopub.execute_input": "2024-06-01T05:12:50.413501Z", - "iopub.status.busy": "2024-06-01T05:12:50.413301Z", - "iopub.status.idle": "2024-06-01T05:12:50.427756Z", - "shell.execute_reply": "2024-06-01T05:12:50.427160Z" + "iopub.execute_input": "2025-01-01T05:13:36.288877Z", + "iopub.status.busy": "2025-01-01T05:13:36.288295Z", + "iopub.status.idle": "2025-01-01T05:13:36.307531Z", + "shell.execute_reply": "2025-01-01T05:13:36.306947Z" }, "papermill": { - "duration": 0.018351, - "end_time": "2024-06-01T05:12:50.429074", + "duration": 0.02301, + "end_time": "2025-01-01T05:13:36.308822", "exception": false, - "start_time": "2024-06-01T05:12:50.410723", + "start_time": "2025-01-01T05:13:36.285812", "status": "completed" }, "tags": [] @@ -374,14 +398,132 @@ " \n", " \n", " \n", + " \n", + " 0\n", + " 39420185\n", + " PMC11487139\n", + " 10.1038/s41467-024-53148-x\n", + " Multimodal gradients of basal forebrain connec...\n", + " [Chakraborty S, Haast RAM, Onuska KM, Kanel P,...\n", + " 2024\n", + " 10\n", + " 18\n", + " Nat Commun\n", + " 15\n", + " 1\n", + " 8990\n", + " \n", + " \n", + " 1\n", + " 39229062\n", + " PMC11370384\n", + " 10.1101/2024.08.19.608590\n", + " The developing hippocampus: Microstructural ev...\n", + " [Karat BG, Genc S, Raven EP, Palombo M, Khan A...\n", + " 2024\n", + " 8\n", + " 19\n", + " bioRxiv\n", + " \n", + " \n", + " \n", + " \n", + " \n", + " 2\n", + " 39144115\n", + " PMC11207789\n", + " 10.1093/schizbullopen/sgae010\n", + " Cortical Network Disruption Is Minimal in Earl...\n", + " [Van Dyken PC, MacKinley M, Khan AR, Palaniyap...\n", + " 2024\n", + " 1\n", + " 1\n", + " Schizophr Bull Open\n", + " 5\n", + " 1\n", + " sgae010\n", + " \n", + " \n", + " 3\n", + " 38951528\n", + " PMC11217278\n", + " 10.1038/s41531-024-00731-0\n", + " Increased mean diffusivity of the caudal motor...\n", + " [Alushaj E, Hemachandra D, Ganjavi H, Seergobi...\n", + " 2024\n", + " 6\n", + " 29\n", + " NPJ Parkinsons Dis\n", + " 10\n", + " 1\n", + " 128\n", + " \n", + " \n", + " 4\n", + " 38839341\n", + " PMC11154849\n", + " 10.1523/JNEUROSCI.1705-23.2024\n", + " Diffusion MRI of the Hippocampus\n", + " [Karat BG, Kohler S, Khan AR]\n", + " 2024\n", + " 6\n", + " 5\n", + " J Neurosci\n", + " 44\n", + " 23\n", + " \n", + " \n", + " \n", + " 5\n", + " 38822981\n", + " \n", + " 10.1007/s11548-024-03186-z\n", + " MRI-degad: toward accurate conversion of gadol...\n", + " [Ogunsanya F, Taha A, Gilmore G, Kai J, Kuehn ...\n", + " 2024\n", + " 7\n", + " 1\n", + " Int J Comput Assist Radiol Surg\n", + " 19\n", + " 7\n", + " 1469-1472\n", + " \n", " \n", "\n", "" ], "text/plain": [ - "Empty DataFrame\n", - "Columns: [pmid, pmcid, doi, title, authors, year, month, day, journal, volume, issue, pages]\n", - "Index: []" + " pmid pmcid doi \\\n", + "0 39420185 PMC11487139 10.1038/s41467-024-53148-x \n", + "1 39229062 PMC11370384 10.1101/2024.08.19.608590 \n", + "2 39144115 PMC11207789 10.1093/schizbullopen/sgae010 \n", + "3 38951528 PMC11217278 10.1038/s41531-024-00731-0 \n", + "4 38839341 PMC11154849 10.1523/JNEUROSCI.1705-23.2024 \n", + "5 38822981 10.1007/s11548-024-03186-z \n", + "\n", + " title \\\n", + "0 Multimodal gradients of basal forebrain connec... \n", + "1 The developing hippocampus: Microstructural ev... \n", + "2 Cortical Network Disruption Is Minimal in Earl... \n", + "3 Increased mean diffusivity of the caudal motor... \n", + "4 Diffusion MRI of the Hippocampus \n", + "5 MRI-degad: toward accurate conversion of gadol... \n", + "\n", + " authors year month day \\\n", + "0 [Chakraborty S, Haast RAM, Onuska KM, Kanel P,... 2024 10 18 \n", + "1 [Karat BG, Genc S, Raven EP, Palombo M, Khan A... 2024 8 19 \n", + "2 [Van Dyken PC, MacKinley M, Khan AR, Palaniyap... 2024 1 1 \n", + "3 [Alushaj E, Hemachandra D, Ganjavi H, Seergobi... 2024 6 29 \n", + "4 [Karat BG, Kohler S, Khan AR] 2024 6 5 \n", + "5 [Ogunsanya F, Taha A, Gilmore G, Kai J, Kuehn ... 2024 7 1 \n", + "\n", + " journal volume issue pages \n", + "0 Nat Commun 15 1 8990 \n", + "1 bioRxiv \n", + "2 Schizophr Bull Open 5 1 sgae010 \n", + "3 NPJ Parkinsons Dis 10 1 128 \n", + "4 J Neurosci 44 23 \n", + "5 Int J Comput Assist Radiol Surg 19 7 1469-1472 " ] }, "execution_count": 6, @@ -412,18 +554,18 @@ "name": "python", "nbconvert_exporter": "python", "pygments_lexer": "ipython3", - 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