NAMESPACE

# Generated by roxygen2: do not edit by hand

S3method(as.data.frame,gplin)
S3method(drawDetails,ballGrob)
S3method(drawDetails,resizingTextGrob)
S3method(plot,gpgen)
S3method(plot,gplin)
S3method(postDrawDetails,ballGrob)
S3method(postDrawDetails,resizingTextGrob)
S3method(preDrawDetails,ballGrob)
S3method(preDrawDetails,resizingTextGrob)
S3method(print,gpdiag)
S3method(print,gpgen)
S3method(print,gpsim)
S3method(print,gpyaml)
S3method(simulate,character)
S3method(simulate,default)
S3method(simulate,gpsim)
export("%dopar%")
export(as.yaml)
export(bake)
export(ballGrob)
export(continueLBDP)
export(continueMoran)
export(continueS2I2R2)
export(continueSEIR)
export(continueSEIRS)
export(continueSI2R)
export(continueSIIR)
export(continueSIR)
export(continueSIRS)
export(continueTwoSpecies)
export(curtail)
export(diagram)
export(foreach)
export(freeze)
export(gendat)
export(geneal)
export(genealogyGrob)
export(getInfo)
export(lbdp_exact)
export(lbdp_pomp)
export(lineages)
export(moran_exact)
export(newick)
export(nodeGrob)
export(parse_newick)
export(plot_grid)
export(pocketGrob)
export(read_yaml)
export(registerDoSEQ)
export(resizingTextGrob)
export(runLBDP)
export(runMoran)
export(runS2I2R2)
export(runSEIR)
export(runSEIRS)
export(runSI2R)
export(runSIIR)
export(runSIR)
export(runSIRS)
export(runTwoSpecies)
export(seirs_pomp)
export(simulate)
export(sir_pomp)
export(sirs_pomp)
export(stew)
export(treeplot)
export(twospecies_pomp)
export(viewport)
export(yaml)
import(ggplot2)
importFrom(ape,read.tree)
importFrom(cowplot,plot_grid)
importFrom(dplyr,coalesce)
importFrom(dplyr,count)
importFrom(dplyr,if_else)
importFrom(dplyr,left_join)
importFrom(dplyr,mutate)
importFrom(foreach,"%dopar%")
importFrom(foreach,foreach)
importFrom(foreach,registerDoSEQ)
importFrom(ggplot2,expand_limits)
importFrom(ggplot2,fortify)
importFrom(ggplot2,geom_step)
importFrom(ggplot2,ggplot)
importFrom(ggplot2,guide_legend)
importFrom(ggplot2,guides)
importFrom(ggplot2,labs)
importFrom(ggplot2,scale_alpha_manual)
importFrom(ggplot2,scale_color_manual)
importFrom(ggplot2,scale_x_continuous)
importFrom(ggplot2,theme_classic)
importFrom(ggtree,geom_nodepoint)
importFrom(ggtree,geom_tippoint)
importFrom(ggtree,geom_tree)
importFrom(ggtree,theme_tree2)
importFrom(grid,circleGrob)
importFrom(grid,convertHeight)
importFrom(grid,drawDetails)
importFrom(grid,gList)
importFrom(grid,gTree)
importFrom(grid,gpar)
importFrom(grid,grid.draw)
importFrom(grid,grid.newpage)
importFrom(grid,grob)
importFrom(grid,grobTree)
importFrom(grid,linesGrob)
importFrom(grid,popViewport)
importFrom(grid,postDrawDetails)
importFrom(grid,preDrawDetails)
importFrom(grid,pushViewport)
importFrom(grid,roundrectGrob)
importFrom(grid,seekViewport)
importFrom(grid,textGrob)
importFrom(grid,unit)
importFrom(grid,upViewport)
importFrom(grid,viewport)
importFrom(pomp,bake)
importFrom(pomp,covariate_table)
importFrom(pomp,freeze)
importFrom(pomp,onestep)
importFrom(pomp,pomp)
importFrom(pomp,stew)
importFrom(scales,alpha)
importFrom(scales,hue_pal)
importFrom(scales,rescale)
importFrom(tibble,as_tibble)
importFrom(tibble,column_to_rownames)
importFrom(tibble,tibble)
importFrom(tidyr,expand_grid)
importFrom(tidyr,pivot_longer)
importFrom(tidyr,separate)
importFrom(tidyr,unite)
importFrom(utils,globalVariables)
importFrom(yaml,as.yaml)
importFrom(yaml,read_yaml)
useDynLib(phylopomp, .registration = TRUE, .fixes="P_")