From a3af90548efdd6383114521c9e2b7a3cebf68f01 Mon Sep 17 00:00:00 2001 From: Dominik Kopczynski Date: Thu, 30 Nov 2023 14:03:59 +0100 Subject: [PATCH] adding trivial mediator db information --- Goslin.g4 | 4 +- trivial_mediators.csv | 106 ++++++++++++++++++++++++++++++++++++++++++ 2 files changed, 108 insertions(+), 2 deletions(-) create mode 100644 trivial_mediators.csv diff --git a/Goslin.g4 b/Goslin.g4 index 5165eb6..7903ae6 100644 --- a/Goslin.g4 +++ b/Goslin.g4 @@ -179,8 +179,8 @@ mediator_tetranor : 'tetranor-' | 'Tetranor-'; mediator_functional_group_clear: mediator_full_function | mediator_function_unknown_pos; mediator_function_unknown_pos : mediator_functions; mediator_functions : mediator_mono_functions | mediator_di_functions; -mediator_mono_functions: 'H' | 'Oxo' | 'oxo' | 'OXO' | 'Hp' | 'NO2'; -mediator_di_functions: 'E' | 'Ep' | 'DH' | 'DiH' | 'diH'; +mediator_mono_functions: 'H' | 'Oxo' | 'oxo' | 'OXO' | 'Hp' | 'HP' | 'NO2'; +mediator_di_functions: 'E' | 'Ep' | 'EP' | 'DH' | 'DiH' | 'diH'; mediator_full_function : mediator_position_group '-' mediator_mono_functions | mediator_di_pos '-' mediator_di_functions; mediator_di_pos: mediator_position_group ',' mediator_position_group | mediator_position_group '_' mediator_position_group | mediator_position_group '(' mediator_position_group ')'; mediator_position_group : mediator_position | mediator_position mediator_position_isotope | mediator_position '(' mediator_position_isotope ')'; diff --git a/trivial_mediators.csv b/trivial_mediators.csv new file mode 100644 index 0000000..fb34cf4 --- /dev/null +++ b/trivial_mediators.csv @@ -0,0 +1,106 @@ +9S-HpODE 10,12 +13-Oxo-ODE 9,11 +9S-HOTrE 10,12,15 +13S-HpODE 9,11 +13R-HODE 9,11 +9(10)-EpOME 12 +12(13)-EpOME 9 +13S-HOTrE 9,11,15 +12,13S-EOT 9,11,15 +8R-HpOME 9 +13R-HpOME 11 +13S-HpOME 11 +12R-HpOME 13 +12S-HpOME 13 +14R-HpOME 12 +14S-HpOME 12 +12R-HpOME 13 +12S-HpOME 13 +10R-HpOME 11 +7-HpOME 5 +8-HpOME 6 +9-HpOME 7 +11-HpOME 9 +12-HpOME 10 +10R-HOME 11 +10S-HOME 11 +12R-HOME 13 +12S-HOME 13 +11R-HOME 12 +11S-HOME 12 +12R-HOME 10 +12S-HOME 10 +12R-HOME 13 +12S-HOME 13 +13R-HOME 11 +13S-HOME 11 +11R-HOME 12 +11S-HOME 12 +6-HpOME 7 +13-HpOME 14 +8R-HpODE 9,12 +13S-HpOTrE 9,11,14 +11S-HpODE 9,12 +9-HODE 10,12 +9S-HODE 10,12 +12R-HODE 9,15 +13R-HODE 9,11 +8R-HOME 9 +7S,8S-DiHODE 9,12 +7S,8S-DiHOME 9 +7S,8S-DiHOTrE 9,12,15 +8S-HODE 9,12 +13S-HODE 9,11 +9,10-DiHOME 12 +12,13-DiHOME 9 +9-OxoODE 10,12 +12,13S-EpODE 9,11 +12S,13R-EpOME 9 +9R,10S-EpOME 12 +8R-HODE 9,12 +17R,18S-EpETE 5,8,11,14 +5S,12R-diHETE 6,8,10,14 +12S-HHTrE 5,8,10 +15-HETrE 8,11,13 +5-HETrE 6,8,11 +8-HETrE 9,11,14 +12-oxoHT 5,8,10 +20-HETE 5,8,11,14 +5S-HpETE 6,8,11,14 +15S-HpETE 5,8,11,13 +11R-HETE 5,8,12,14 +8R-HpETE 5,9,11,14 +5,12-DiHETE 6,8,10,14 +8-HETE 5,9,11,14 +9-HETE 5,7,11,14 +11-HETE 5,8,12,14 +12-HETE 5,8,10,14 +12(S)-HETE 5,8,10,14 +12-HETE 5,8,10,14 +15-HETE 5,8,11,13 +15(R)-HETE 5,8,11,13 +5S,11R-DiHETE 6,8,12,14 +15-HPETE 5,8,11,13 +16-HETE 5,8,11,14 +19-HETE 5,8,11,14 +5,15-DiHETE 6,8,11,13 +5-HPETE 6,8,11,14 +13R-HETE 5,8,11,14 +11-HEPE 5,8,12,14,17 +14R,15S-EpETrE 5,8,11 +5,6-EET 8,11,14 +8,9-EET 5,11,14 +11,12-EET 5,8,14 +14,15-EET 5,8,11 +14S,15R-EpETrE 5,8,11 +11S,12R-EpETrE 5,8,14 +11R,12S-EpETrE 5,8,14 +5R,6S-EpETrE 8,11,14 +5S,6R-EpETrE 8,11,14 +8R,9S-EpETrE 5,11,14 +8S,9R-EpETrE 5,11,14 +17,18-diHEPE 5,8,11,13,15 +17R,18R-diHEPE 5,8,11,13,15 +17,18-diHEPE 5,8,11,13,15 +17R,18S-diHEPE 5,8,11,13,15 +10S,17S-DiHDoHE 4,7,11,13,15,19