Scripts for analysis of genomics, transcriptomics, population genetics, and horizontal transfers across multiple Fusarium species (F. xylarioides, F. oxysporum, and F. solani).
A repository for all custom analysis and plotting scripts for the manuscript 'Horizontal transfers between fungal Fusarium species contributed to successive outbreaks of coffee wilt disease' (Peck et al. 2024; https://doi.org/10.1101/2023.12.22.572981).
A Coffea arabica leaf infected with Fusarium xylarioides, a vascular wilt pathogen and the causal agent of coffee wilt disease. The leaf exhibits yellowing, a typical early symptom of infection, as the pathogen colonises the plant xylem. Photo: Lily Peck