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the default spikeinExt doesn't get appended to spikein chromosome names in all cases #1085

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katsikora opened this issue Jan 10, 2025 · 1 comment

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bug createIndices

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katsikora commented Jan 10, 2025

snakePipes 3.0.0

genome: GRCm38_ensembl
spikein genome: dm6_ensembl

katsikora added bug createIndices labels

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katsikora commented Jan 10, 2025

this works on cli:

sed 's/\s\+/_spikein /'

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Issue fixes #1088

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katsikora mentioned this issue

Fixes tested live #1090

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