From d0721562d0fc8b767a69aac632e35ec91d1bb0e7 Mon Sep 17 00:00:00 2001 From: Renovate Bot Date: Thu, 31 Mar 2022 11:19:33 +0000 Subject: [PATCH] chore(deps): update ubuntu docker tag to v22 --- docker/toolkit-bwa-samtools/Dockerfile | 2 +- docker/toolkit-checkm/Dockerfile | 2 +- docker/toolkit-cmseq/Dockerfile | 2 +- docker/toolkit-mob-suite/Dockerfile | 2 +- docker/toolkit-prokka/Dockerfile | 2 +- docker/toolkit-sans/Dockerfile | 2 +- 6 files changed, 6 insertions(+), 6 deletions(-) diff --git a/docker/toolkit-bwa-samtools/Dockerfile b/docker/toolkit-bwa-samtools/Dockerfile index d99991cf..05ed54e9 100644 --- a/docker/toolkit-bwa-samtools/Dockerfile +++ b/docker/toolkit-bwa-samtools/Dockerfile @@ -1,6 +1,6 @@ FROM quay.io/biocontainers/bwa:0.7.17--h5bf99c6_8 AS bwa -FROM ubuntu:20.04 +FROM ubuntu:22.04 ENV SAMTOOLS=samtools-1.12 RUN apt update && apt install -y bc libgomp1 libgetopt-complete-perl wget autoconf automake make gcc perl zlib1g-dev libbz2-dev liblzma-dev libcurl4-gnutls-dev libssl-dev libncurses5-dev RUN wget -qO- https://github.com/samtools/samtools/releases/download/1.12/samtools-1.12.tar.bz2 | tar jxvf - &&\ diff --git a/docker/toolkit-checkm/Dockerfile b/docker/toolkit-checkm/Dockerfile index 4309db91..54abbea9 100644 --- a/docker/toolkit-checkm/Dockerfile +++ b/docker/toolkit-checkm/Dockerfile @@ -1,4 +1,4 @@ -FROM ubuntu:18.04 +FROM ubuntu:22.04 ENV CHECKM_VERSION=1.1.3 COPY run_checkm.sh /usr/local/bin/ COPY config_location.patch /root/ diff --git a/docker/toolkit-cmseq/Dockerfile b/docker/toolkit-cmseq/Dockerfile index 83639d4b..cc65b292 100644 --- a/docker/toolkit-cmseq/Dockerfile +++ b/docker/toolkit-cmseq/Dockerfile @@ -1,4 +1,4 @@ -FROM ubuntu:18.04 +FROM ubuntu:22.04 WORKDIR /usr/local/bin ENV LC_ALL=C.UTF-8 RUN apt update && \ diff --git a/docker/toolkit-mob-suite/Dockerfile b/docker/toolkit-mob-suite/Dockerfile index c572a265..27b2eeb8 100644 --- a/docker/toolkit-mob-suite/Dockerfile +++ b/docker/toolkit-mob-suite/Dockerfile @@ -1,4 +1,4 @@ -FROM ubuntu:21.04 +FROM ubuntu:22.04 ENV VERSION=3.0.3 RUN ln -fs /usr/share/zoneinfo/America/New_York /etc/localtime && \ apt update && apt install wget git python3-pip -y && \ diff --git a/docker/toolkit-prokka/Dockerfile b/docker/toolkit-prokka/Dockerfile index 3be76406..23bceaab 100644 --- a/docker/toolkit-prokka/Dockerfile +++ b/docker/toolkit-prokka/Dockerfile @@ -1,4 +1,4 @@ -FROM ubuntu:18.04 +FROM ubuntu:22.04 # metadata LABEL website="https://github.com/tseemann/prokka" diff --git a/docker/toolkit-sans/Dockerfile b/docker/toolkit-sans/Dockerfile index 0c5aa443..5eda5ca5 100644 --- a/docker/toolkit-sans/Dockerfile +++ b/docker/toolkit-sans/Dockerfile @@ -1,4 +1,4 @@ -FROM ubuntu:18.04 +FROM ubuntu:22.04 WORKDIR /sans RUN apt update && apt install -y wget g++ git make python3.8 python3-dendropy && \ git clone https://gitlab.ub.uni-bielefeld.de/gi/sans.git . && \