From 1a396c36b95fabccb3f8f12e095b3ed8ddf22201 Mon Sep 17 00:00:00 2001
From: Peter Belmann <pbelmann@cebitec.uni-bielefeld.de>
Date: Fri, 15 Nov 2024 09:32:30 +0000
Subject: [PATCH] fix(magAttributes): create checkm2 database dir only when
 necessary

---
 modules/magAttributes/module.nf | 2 +-
 1 file changed, 1 insertion(+), 1 deletion(-)

diff --git a/modules/magAttributes/module.nf b/modules/magAttributes/module.nf
index fd5da698..12c1a2e3 100644
--- a/modules/magAttributes/module.nf
+++ b/modules/magAttributes/module.nf
@@ -90,7 +90,7 @@ process pCheckM2 {
 
     containerOptions Utils.getDockerMount(params.steps?.magAttributes?.checkm2?.database, params) + Utils.getDockerNetwork()
 
-    beforeScript "mkdir -p ${params.polished.databases}"
+    beforeScript Utils.getCreateDatabaseDirCommand("${params.polished.databases}")
 
     label 'medium'