From efc8b530a82272a7b3320a1172c6ada92b12e110 Mon Sep 17 00:00:00 2001 From: Yasemin Bridges Date: Tue, 12 Nov 2024 14:00:09 +0000 Subject: [PATCH 1/2] add missing `pt_id` parameter --- src/phenotype2phenopacket/convert/convert.py | 2 +- 1 file changed, 1 insertion(+), 1 deletion(-) diff --git a/src/phenotype2phenopacket/convert/convert.py b/src/phenotype2phenopacket/convert/convert.py index 8b5e37d..32d1cb6 100644 --- a/src/phenotype2phenopacket/convert/convert.py +++ b/src/phenotype2phenopacket/convert/convert.py @@ -39,7 +39,7 @@ def convert_to_phenopackets( for omim_disease in grouped_omim_diseases: phenopacket_file = PhenotypeAnnotationToPhenopacketConverter( human_phenotype_ontology - ).create_phenopacket(omim_disease, phenotype_annotation_data.version) + ).create_phenopacket(omim_disease, phenotype_annotation_data.version, None) write_phenopacket( phenopacket_file.phenopacket, output_dir.joinpath(phenopacket_file.phenopacket_path) ) From 74a0a24aed0db14957263f9ce42d7723fffd3589 Mon Sep 17 00:00:00 2001 From: Yasemin Bridges Date: Tue, 12 Nov 2024 14:00:21 +0000 Subject: [PATCH 2/2] bump version --- pyproject.toml | 2 +- 1 file changed, 1 insertion(+), 1 deletion(-) diff --git a/pyproject.toml b/pyproject.toml index 1517a35..8e5aff1 100644 --- a/pyproject.toml +++ b/pyproject.toml @@ -1,6 +1,6 @@ [tool.poetry] name = "phenotype2phenopacket" -version = "0.6.0" +version = "0.6.1" description = "" authors = ["Yasemin Bridges "] readme = "README.md"