diff --git a/README.md b/README.md index 84abbce..569d882 100755 --- a/README.md +++ b/README.md @@ -45,7 +45,7 @@ pennbbl/qsiprep:0.15.1 /datain /datain/derivatives/ --recon-input /datain/deriva --participant-label sub-SUB330 --fs-license-file /opt/freesurfer/license.txt # Running SCFSL GPU tractography - docker exec --gpus all -e LD_LIBRARY_PATH=$LD_LIBRARY_PATH:/usr/local/cuda-9.1/lib64 \ + docker exec --gpus all -e LD_LIBRARY_PATH=$LD_LIBRARY_PATH:/usr/local/cuda-10.2/lib64 \ -v /path/to/freesurfer/license.txt:/opt/freesurfer/license.txt \ -v /path/project/bids:/data mrfilbi/scfsl_gpu:0.3.2 /bin/bash /scripts/proc_fsl_connectome_fsonly.sh sub-SUB339 ses-A @@ -60,7 +60,7 @@ singularity run --nv -B /path/project/bids:/datain,/path/to/freesurfer/license.t /path/to/qsiprep-v0.15.1.sif /datain /datain/derivatives/ --recon-input /datain/derivatives/qsiprep/ --recon_spec reorient_fslstd \ --output-resolution 1.6 participant --participant-label sub-SUB330 --fs-license-file /opt/freesurfer/license.txt # Running SCFSL GPU tractography -SINGULARITY_ENVLD_LIBRARY_PATH=$LD_LIBRARY_PATH:/usr/local/cuda-9.1/lib64 \ +SINGULARITY_ENVLD_LIBRARY_PATH=$LD_LIBRARY_PATH:/usr/local/cuda-10.2/lib64 \ singularity exec --nv -B /path/to/freesurfer/license.txt:/opt/freesurfer/license.txt,/path/project/bids:/data \ /path/to/scfsl_gpu-v0.3.2.sif /bin/bash /scripts/proc_fsl_connectome_fsonly.sh sub-SUB339 ses-A