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<!DOCTYPE HTML PUBLIC "-//W3C//DTD HTML 4.01 Transitional//EN" "http://www.w3.org/TR/html4/loose.dtd">
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<!-- Generated by javadoc (1.8.0_202) on Sun May 05 11:55:52 EDT 2019 -->
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<title>Class Hierarchy (MSDK - Mass Spectrometry Development Kit 0.0.20 API)</title>
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<div class="header">
<h1 class="title">Hierarchy For All Packages</h1>
<span class="packageHierarchyLabel">Package Hierarchies:</span>
<ul class="horizontal">
<li><a href="fr/profi/mzdb/package-tree.html">fr.profi.mzdb</a>, </li>
<li><a href="fr/profi/mzdb/cli/package-tree.html">fr.profi.mzdb.cli</a>, </li>
<li><a href="fr/profi/mzdb/db/model/package-tree.html">fr.profi.mzdb.db.model</a>, </li>
<li><a href="fr/profi/mzdb/db/model/params/package-tree.html">fr.profi.mzdb.db.model.params</a>, </li>
<li><a href="fr/profi/mzdb/db/model/params/param/package-tree.html">fr.profi.mzdb.db.model.params.param</a>, </li>
<li><a href="fr/profi/mzdb/db/model/params/thermo/package-tree.html">fr.profi.mzdb.db.model.params.thermo</a>, </li>
<li><a href="fr/profi/mzdb/db/table/package-tree.html">fr.profi.mzdb.db.table</a>, </li>
<li><a href="fr/profi/mzdb/io/reader/package-tree.html">fr.profi.mzdb.io.reader</a>, </li>
<li><a href="fr/profi/mzdb/io/reader/bb/package-tree.html">fr.profi.mzdb.io.reader.bb</a>, </li>
<li><a href="fr/profi/mzdb/io/reader/cache/package-tree.html">fr.profi.mzdb.io.reader.cache</a>, </li>
<li><a href="fr/profi/mzdb/io/reader/iterator/package-tree.html">fr.profi.mzdb.io.reader.iterator</a>, </li>
<li><a href="fr/profi/mzdb/io/reader/provider/package-tree.html">fr.profi.mzdb.io.reader.provider</a>, </li>
<li><a href="fr/profi/mzdb/io/reader/table/package-tree.html">fr.profi.mzdb.io.reader.table</a>, </li>
<li><a href="fr/profi/mzdb/io/writer/package-tree.html">fr.profi.mzdb.io.writer</a>, </li>
<li><a href="fr/profi/mzdb/io/writer/mgf/package-tree.html">fr.profi.mzdb.io.writer.mgf</a>, </li>
<li><a href="fr/profi/mzdb/model/package-tree.html">fr.profi.mzdb.model</a>, </li>
<li><a href="fr/profi/mzdb/util/concurrent/package-tree.html">fr.profi.mzdb.util.concurrent</a>, </li>
<li><a href="fr/profi/mzdb/util/iterator/package-tree.html">fr.profi.mzdb.util.iterator</a>, </li>
<li><a href="fr/profi/mzdb/util/jaxb/package-tree.html">fr.profi.mzdb.util.jaxb</a>, </li>
<li><a href="fr/profi/mzdb/util/lambda/package-tree.html">fr.profi.mzdb.util.lambda</a>, </li>
<li><a href="fr/profi/mzdb/util/misc/package-tree.html">fr.profi.mzdb.util.misc</a>, </li>
<li><a href="fr/profi/mzdb/util/ms/package-tree.html">fr.profi.mzdb.util.ms</a>, </li>
<li><a href="fr/profi/mzdb/util/primitives/package-tree.html">fr.profi.mzdb.util.primitives</a>, </li>
<li><a href="fr/profi/mzdb/util/sqlite/package-tree.html">fr.profi.mzdb.util.sqlite</a>, </li>
<li><a href="fr/profi/mzdb/util/threading/package-tree.html">fr.profi.mzdb.util.threading</a>, </li>
<li><a href="io/github/msdk/package-tree.html">io.github.msdk</a>, </li>
<li><a href="io/github/msdk/alignment/joinaligner/package-tree.html">io.github.msdk.alignment.joinaligner</a>, </li>
<li><a href="io/github/msdk/alignment/ransac/package-tree.html">io.github.msdk.alignment.ransac</a>, </li>
<li><a href="io/github/msdk/datamodel/package-tree.html">io.github.msdk.datamodel</a>, </li>
<li><a href="io/github/msdk/featuredetection/adap3d/package-tree.html">io.github.msdk.featuredetection.adap3d</a>, </li>
<li><a href="io/github/msdk/featuredetection/adap3d/algorithms/package-tree.html">io.github.msdk.featuredetection.adap3d.algorithms</a>, </li>
<li><a href="io/github/msdk/featuredetection/adap3d/datamodel/package-tree.html">io.github.msdk.featuredetection.adap3d.datamodel</a>, </li>
<li><a href="io/github/msdk/featuredetection/chromatogrambuilder/package-tree.html">io.github.msdk.featuredetection.chromatogrambuilder</a>, </li>
<li><a href="io/github/msdk/featuredetection/gridmass/package-tree.html">io.github.msdk.featuredetection.gridmass</a>, </li>
<li><a href="io/github/msdk/featuredetection/msmsdetection/package-tree.html">io.github.msdk.featuredetection.msmsdetection</a>, </li>
<li><a href="io/github/msdk/featuredetection/openms/package-tree.html">io.github.msdk.featuredetection.openms</a>, </li>
<li><a href="io/github/msdk/featuredetection/srm/package-tree.html">io.github.msdk.featuredetection.srm</a>, </li>
<li><a href="io/github/msdk/featuredetection/targeted/package-tree.html">io.github.msdk.featuredetection.targeted</a>, </li>
<li><a href="io/github/msdk/id/localdatabase/package-tree.html">io.github.msdk.id.localdatabase</a>, </li>
<li><a href="io/github/msdk/id/sirius/package-tree.html">io.github.msdk.id.sirius</a>, </li>
<li><a href="io/github/msdk/io/package-tree.html">io.github.msdk.io</a>, </li>
<li><a href="io/github/msdk/io/chromatof/package-tree.html">io.github.msdk.io.chromatof</a>, </li>
<li><a href="io/github/msdk/io/filetypedetection/package-tree.html">io.github.msdk.io.filetypedetection</a>, </li>
<li><a href="io/github/msdk/io/mgf/package-tree.html">io.github.msdk.io.mgf</a>, </li>
<li><a href="io/github/msdk/io/msp/package-tree.html">io.github.msdk.io.msp</a>, </li>
<li><a href="io/github/msdk/io/mzdata/package-tree.html">io.github.msdk.io.mzdata</a>, </li>
<li><a href="io/github/msdk/io/mzdb/package-tree.html">io.github.msdk.io.mzdb</a>, </li>
<li><a href="io/github/msdk/io/mzml/package-tree.html">io.github.msdk.io.mzml</a>, </li>
<li><a href="io/github/msdk/io/mzml/data/package-tree.html">io.github.msdk.io.mzml.data</a>, </li>
<li><a href="io/github/msdk/io/mzml/util/package-tree.html">io.github.msdk.io.mzml.util</a>, </li>
<li><a href="io/github/msdk/io/mztab/package-tree.html">io.github.msdk.io.mztab</a>, </li>
<li><a href="io/github/msdk/io/mzxml/package-tree.html">io.github.msdk.io.mzxml</a>, </li>
<li><a href="io/github/msdk/io/nativeformats/package-tree.html">io.github.msdk.io.nativeformats</a>, </li>
<li><a href="io/github/msdk/io/netcdf/package-tree.html">io.github.msdk.io.netcdf</a>, </li>
<li><a href="io/github/msdk/io/txt/package-tree.html">io.github.msdk.io.txt</a>, </li>
<li><a href="io/github/msdk/isotopes/isotopegrouper/package-tree.html">io.github.msdk.isotopes.isotopegrouper</a>, </li>
<li><a href="io/github/msdk/isotopes/isotopepattern/package-tree.html">io.github.msdk.isotopes.isotopepattern</a>, </li>
<li><a href="io/github/msdk/normalization/compound/package-tree.html">io.github.msdk.normalization.compound</a>, </li>
<li><a href="io/github/msdk/rawdata/filters/package-tree.html">io.github.msdk.rawdata.filters</a>, </li>
<li><a href="io/github/msdk/spectra/centroiding/package-tree.html">io.github.msdk.spectra.centroiding</a>, </li>
<li><a href="io/github/msdk/spectra/centroidprofiledetection/package-tree.html">io.github.msdk.spectra.centroidprofiledetection</a>, </li>
<li><a href="io/github/msdk/spectra/peakinvestigator/package-tree.html">io.github.msdk.spectra.peakinvestigator</a>, </li>
<li><a href="io/github/msdk/spectra/peakinvestigator/providers/package-tree.html">io.github.msdk.spectra.peakinvestigator.providers</a>, </li>
<li><a href="io/github/msdk/spectra/similarity/package-tree.html">io.github.msdk.spectra.similarity</a>, </li>
<li><a href="io/github/msdk/spectra/splash/package-tree.html">io.github.msdk.spectra.splash</a>, </li>
<li><a href="io/github/msdk/util/package-tree.html">io.github.msdk.util</a>, </li>
<li><a href="io/github/msdk/util/tolerances/package-tree.html">io.github.msdk.util.tolerances</a></li>
</ul>
</div>
<div class="contentContainer">
<h2 title="Class Hierarchy">Class Hierarchy</h2>
<ul>
<li type="circle">java.lang.<a href="https://docs.oracle.com/javase/8/docs/api/java/lang/Object.html?is-external=true" title="class or interface in java.lang"><span class="typeNameLink">Object</span></a>
<ul>
<li type="circle">fr.profi.mzdb.io.reader.bb.<a href="fr/profi/mzdb/io/reader/bb/AbstractBlobReader.html" title="class in fr.profi.mzdb.io.reader.bb"><span class="typeNameLink">AbstractBlobReader</span></a> (implements fr.profi.mzdb.io.reader.bb.<a href="fr/profi/mzdb/io/reader/bb/IBlobReader.html" title="interface in fr.profi.mzdb.io.reader.bb">IBlobReader</a>)
<ul>
<li type="circle">fr.profi.mzdb.io.reader.bb.<a href="fr/profi/mzdb/io/reader/bb/BytesReader.html" title="class in fr.profi.mzdb.io.reader.bb"><span class="typeNameLink">BytesReader</span></a></li>
<li type="circle">fr.profi.mzdb.io.reader.bb.<a href="fr/profi/mzdb/io/reader/bb/SQLiteBlobReader.html" title="class in fr.profi.mzdb.io.reader.bb"><span class="typeNameLink">SQLiteBlobReader</span></a></li>
<li type="circle">fr.profi.mzdb.io.reader.bb.<a href="fr/profi/mzdb/io/reader/bb/StreamReader.html" title="class in fr.profi.mzdb.io.reader.bb"><span class="typeNameLink">StreamReader</span></a></li>
</ul>
</li>
<li type="circle">fr.profi.mzdb.util.misc.<a href="fr/profi/mzdb/util/misc/AbstractInMemoryIdGen.html" title="class in fr.profi.mzdb.util.misc"><span class="typeNameLink">AbstractInMemoryIdGen</span></a>
<ul>
<li type="circle">fr.profi.mzdb.db.model.<a href="fr/profi/mzdb/db/model/AbstractTableModel.html" title="class in fr.profi.mzdb.db.model"><span class="typeNameLink">AbstractTableModel</span></a> (implements fr.profi.mzdb.db.model.params.<a href="fr/profi/mzdb/db/model/params/IParamContainer.html" title="interface in fr.profi.mzdb.db.model.params">IParamContainer</a>)
<ul>
<li type="circle">fr.profi.mzdb.db.model.<a href="fr/profi/mzdb/db/model/MzDbHeader.html" title="class in fr.profi.mzdb.db.model"><span class="typeNameLink">MzDbHeader</span></a></li>
<li type="circle">fr.profi.mzdb.db.model.<a href="fr/profi/mzdb/db/model/Run.html" title="class in fr.profi.mzdb.db.model"><span class="typeNameLink">Run</span></a></li>
<li type="circle">fr.profi.mzdb.db.model.<a href="fr/profi/mzdb/db/model/Sample.html" title="class in fr.profi.mzdb.db.model"><span class="typeNameLink">Sample</span></a></li>
<li type="circle">fr.profi.mzdb.db.model.<a href="fr/profi/mzdb/db/model/Software.html" title="class in fr.profi.mzdb.db.model"><span class="typeNameLink">Software</span></a></li>
<li type="circle">fr.profi.mzdb.db.model.<a href="fr/profi/mzdb/db/model/SourceFile.html" title="class in fr.profi.mzdb.db.model"><span class="typeNameLink">SourceFile</span></a></li>
<li type="circle">fr.profi.mzdb.model.<a href="fr/profi/mzdb/model/SpectrumHeader.html" title="class in fr.profi.mzdb.model"><span class="typeNameLink">SpectrumHeader</span></a> (implements fr.profi.mzdb.model.<a href="fr/profi/mzdb/model/ILcContext.html" title="interface in fr.profi.mzdb.model">ILcContext</a>)</li>
</ul>
</li>
<li type="circle">fr.profi.mzdb.db.model.<a href="fr/profi/mzdb/db/model/InstrumentConfiguration.html" title="class in fr.profi.mzdb.db.model"><span class="typeNameLink">InstrumentConfiguration</span></a></li>
<li type="circle">fr.profi.mzdb.model.<a href="fr/profi/mzdb/model/RunSliceData.html" title="class in fr.profi.mzdb.model"><span class="typeNameLink">RunSliceData</span></a></li>
<li type="circle">fr.profi.mzdb.model.<a href="fr/profi/mzdb/model/RunSliceHeader.html" title="class in fr.profi.mzdb.model"><span class="typeNameLink">RunSliceHeader</span></a> (implements java.lang.<a href="https://docs.oracle.com/javase/8/docs/api/java/lang/Comparable.html?is-external=true" title="class or interface in java.lang">Comparable</a><T>)</li>
</ul>
</li>
<li type="circle">java.util.<a href="https://docs.oracle.com/javase/8/docs/api/java/util/AbstractMap.html?is-external=true" title="class or interface in java.util"><span class="typeNameLink">AbstractMap</span></a><K,V> (implements java.util.<a href="https://docs.oracle.com/javase/8/docs/api/java/util/Map.html?is-external=true" title="class or interface in java.util">Map</a><K,V>)
<ul>
<li type="circle">java.util.<a href="https://docs.oracle.com/javase/8/docs/api/java/util/HashMap.html?is-external=true" title="class or interface in java.util"><span class="typeNameLink">HashMap</span></a><K,V> (implements java.lang.<a href="https://docs.oracle.com/javase/8/docs/api/java/lang/Cloneable.html?is-external=true" title="class or interface in java.lang">Cloneable</a>, java.util.<a href="https://docs.oracle.com/javase/8/docs/api/java/util/Map.html?is-external=true" title="class or interface in java.util">Map</a><K,V>, java.io.<a href="https://docs.oracle.com/javase/8/docs/api/java/io/Serializable.html?is-external=true" title="class or interface in java.io">Serializable</a>)
<ul>
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<li type="circle">fr.profi.mzdb.io.reader.iterator.<a href="fr/profi/mzdb/io/reader/iterator/SpectrumRangeIterator.html" title="class in fr.profi.mzdb.io.reader.iterator"><span class="typeNameLink">SpectrumRangeIterator</span></a> (implements java.util.<a href="https://docs.oracle.com/javase/8/docs/api/java/util/Iterator.html?is-external=true" title="class or interface in java.util">Iterator</a><E>)</li>
<li type="circle">io.github.msdk.spectra.centroidprofiledetection.<a href="io/github/msdk/spectra/centroidprofiledetection/SpectrumTypeDetectionAlgorithm.html" title="class in io.github.msdk.spectra.centroidprofiledetection"><span class="typeNameLink">SpectrumTypeDetectionAlgorithm</span></a></li>
<li type="circle">io.github.msdk.spectra.splash.<a href="io/github/msdk/spectra/splash/SplashCalculationAlgorithm.html" title="class in io.github.msdk.spectra.splash"><span class="typeNameLink">SplashCalculationAlgorithm</span></a></li>
<li type="circle">fr.profi.mzdb.util.sqlite.<a href="fr/profi/mzdb/util/sqlite/SQLiteJobWrapper.html" title="class in fr.profi.mzdb.util.sqlite"><span class="typeNameLink">SQLiteJobWrapper</span></a><T> (implements fr.profi.mzdb.util.sqlite.<a href="fr/profi/mzdb/util/sqlite/ISQLiteConnectionFunction.html" title="interface in fr.profi.mzdb.util.sqlite">ISQLiteConnectionFunction</a><T>)</li>
<li type="circle">fr.profi.mzdb.util.sqlite.<a href="fr/profi/mzdb/util/sqlite/SQLiteQuery.html" title="class in fr.profi.mzdb.util.sqlite"><span class="typeNameLink">SQLiteQuery</span></a></li>
<li type="circle">fr.profi.mzdb.util.sqlite.<a href="fr/profi/mzdb/util/sqlite/SQLiteRecord.html" title="class in fr.profi.mzdb.util.sqlite"><span class="typeNameLink">SQLiteRecord</span></a></li>
<li type="circle">fr.profi.mzdb.util.sqlite.<a href="fr/profi/mzdb/util/sqlite/SQLiteRecordIterator.html" title="class in fr.profi.mzdb.util.sqlite"><span class="typeNameLink">SQLiteRecordIterator</span></a> (implements java.util.<a href="https://docs.oracle.com/javase/8/docs/api/java/util/Iterator.html?is-external=true" title="class or interface in java.util">Iterator</a><E>)</li>
<li type="circle">fr.profi.mzdb.util.sqlite.<a href="fr/profi/mzdb/util/sqlite/SQLiteResultDescriptor.html" title="class in fr.profi.mzdb.util.sqlite"><span class="typeNameLink">SQLiteResultDescriptor</span></a></li>
<li type="circle">io.github.msdk.featuredetection.srm.<a href="io/github/msdk/featuredetection/srm/SrmDetectionMethod.html" title="class in io.github.msdk.featuredetection.srm"><span class="typeNameLink">SrmDetectionMethod</span></a> (implements io.github.msdk.<a href="io/github/msdk/MSDKMethod.html" title="interface in io.github.msdk">MSDKMethod</a><ResultType>)</li>
<li type="circle">io.github.msdk.io.mzml.util.<a href="io/github/msdk/io/mzml/util/TagTracker.html" title="class in io.github.msdk.io.mzml.util"><span class="typeNameLink">TagTracker</span></a></li>
<li type="circle">io.github.msdk.featuredetection.targeted.<a href="io/github/msdk/featuredetection/targeted/TargetedDetectionMethod.html" title="class in io.github.msdk.featuredetection.targeted"><span class="typeNameLink">TargetedDetectionMethod</span></a> (implements io.github.msdk.<a href="io/github/msdk/MSDKMethod.html" title="interface in io.github.msdk">MSDKMethod</a><ResultType>)</li>
<li type="circle">fr.profi.mzdb.db.model.params.thermo.<a href="fr/profi/mzdb/db/model/params/thermo/ThermoFragmentationTarget.html" title="class in fr.profi.mzdb.db.model.params.thermo"><span class="typeNameLink">ThermoFragmentationTarget</span></a></li>
<li type="circle">io.github.msdk.io.nativeformats.<a href="io/github/msdk/io/nativeformats/ThermoRawImportMethod.html" title="class in io.github.msdk.io.nativeformats"><span class="typeNameLink">ThermoRawImportMethod</span></a> (implements io.github.msdk.<a href="io/github/msdk/MSDKMethod.html" title="interface in io.github.msdk">MSDKMethod</a><ResultType>)</li>
<li type="circle">fr.profi.mzdb.db.model.params.thermo.<a href="fr/profi/mzdb/db/model/params/thermo/ThermoScanMetaData.html" title="class in fr.profi.mzdb.db.model.params.thermo"><span class="typeNameLink">ThermoScanMetaData</span></a></li>
<li type="circle">java.lang.<a href="https://docs.oracle.com/javase/8/docs/api/java/lang/Throwable.html?is-external=true" title="class or interface in java.lang"><span class="typeNameLink">Throwable</span></a> (implements java.io.<a href="https://docs.oracle.com/javase/8/docs/api/java/io/Serializable.html?is-external=true" title="class or interface in java.io">Serializable</a>)
<ul>
<li type="circle">java.lang.<a href="https://docs.oracle.com/javase/8/docs/api/java/lang/Exception.html?is-external=true" title="class or interface in java.lang"><span class="typeNameLink">Exception</span></a>
<ul>
<li type="circle">io.github.msdk.<a href="io/github/msdk/MSDKException.html" title="class in io.github.msdk"><span class="typeNameLink">MSDKException</span></a></li>
<li type="circle">java.lang.<a href="https://docs.oracle.com/javase/8/docs/api/java/lang/RuntimeException.html?is-external=true" title="class or interface in java.lang"><span class="typeNameLink">RuntimeException</span></a>
<ul>
<li type="circle">io.github.msdk.<a href="io/github/msdk/MSDKRuntimeException.html" title="class in io.github.msdk"><span class="typeNameLink">MSDKRuntimeException</span></a>
<ul>
<li type="circle">io.github.msdk.<a href="io/github/msdk/MSDKConstraintViolationException.html" title="class in io.github.msdk"><span class="typeNameLink">MSDKConstraintViolationException</span></a></li>
</ul>
</li>
</ul>
</li>
</ul>
</li>
</ul>
</li>
<li type="circle">io.github.msdk.io.txt.<a href="io/github/msdk/io/txt/TxtExportAlgorithm.html" title="class in io.github.msdk.io.txt"><span class="typeNameLink">TxtExportAlgorithm</span></a></li>
<li type="circle">io.github.msdk.io.txt.<a href="io/github/msdk/io/txt/TxtImportAlgorithm.html" title="class in io.github.msdk.io.txt"><span class="typeNameLink">TxtImportAlgorithm</span></a></li>
<li type="circle">fr.profi.mzdb.db.model.params.param.<a href="fr/profi/mzdb/db/model/params/param/UserParam.html" title="class in fr.profi.mzdb.db.model.params.param"><span class="typeNameLink">UserParam</span></a></li>
<li type="circle">fr.profi.mzdb.db.model.params.param.<a href="fr/profi/mzdb/db/model/params/param/UserText.html" title="class in fr.profi.mzdb.db.model.params.param"><span class="typeNameLink">UserText</span></a></li>
<li type="circle">io.github.msdk.io.nativeformats.<a href="io/github/msdk/io/nativeformats/WatersRawImportMethod.html" title="class in io.github.msdk.io.nativeformats"><span class="typeNameLink">WatersRawImportMethod</span></a> (implements io.github.msdk.<a href="io/github/msdk/MSDKMethod.html" title="interface in io.github.msdk">MSDKMethod</a><ResultType>)</li>
<li type="circle">io.github.msdk.spectra.centroiding.<a href="io/github/msdk/spectra/centroiding/WaveletCentroidingAlgorithm.html" title="class in io.github.msdk.spectra.centroiding"><span class="typeNameLink">WaveletCentroidingAlgorithm</span></a> (implements io.github.msdk.spectra.centroiding.<a href="io/github/msdk/spectra/centroiding/MSDKCentroidingAlgorithm.html" title="interface in io.github.msdk.spectra.centroiding">MSDKCentroidingAlgorithm</a>)</li>
<li type="circle">fr.profi.mzdb.util.jaxb.<a href="fr/profi/mzdb/util/jaxb/XercesSAXParser.html" title="class in fr.profi.mzdb.util.jaxb"><span class="typeNameLink">XercesSAXParser</span></a></li>
<li type="circle">io.github.msdk.io.mzxml.<a href="io/github/msdk/io/mzxml/ZlibCompressionUtil.html" title="class in io.github.msdk.io.mzxml"><span class="typeNameLink">ZlibCompressionUtil</span></a></li>
</ul>
</li>
</ul>
<h2 title="Interface Hierarchy">Interface Hierarchy</h2>
<ul>
<li type="circle">io.github.msdk.datamodel.<a href="io/github/msdk/datamodel/ActivationInfo.html" title="interface in io.github.msdk.datamodel"><span class="typeNameLink">ActivationInfo</span></a></li>
<li type="circle">fr.profi.mzdb.util.concurrent.<a href="fr/profi/mzdb/util/concurrent/Callback.html" title="interface in fr.profi.mzdb.util.concurrent"><span class="typeNameLink">Callback</span></a><T></li>
<li type="circle">io.github.msdk.datamodel.<a href="io/github/msdk/datamodel/Chromatogram.html" title="interface in io.github.msdk.datamodel"><span class="typeNameLink">Chromatogram</span></a></li>
<li type="circle">io.github.msdk.datamodel.<a href="io/github/msdk/datamodel/Feature.html" title="interface in io.github.msdk.datamodel"><span class="typeNameLink">Feature</span></a>
<ul>
<li type="circle">io.github.msdk.datamodel.<a href="io/github/msdk/datamodel/GroupedFeature.html" title="interface in io.github.msdk.datamodel"><span class="typeNameLink">GroupedFeature</span></a></li>
</ul>
</li>
<li type="circle">io.github.msdk.datamodel.<a href="io/github/msdk/datamodel/FeatureTable.html" title="interface in io.github.msdk.datamodel"><span class="typeNameLink">FeatureTable</span></a></li>
<li type="circle">io.github.msdk.datamodel.<a href="io/github/msdk/datamodel/FeatureTableRow.html" title="interface in io.github.msdk.datamodel"><span class="typeNameLink">FeatureTableRow</span></a></li>
<li type="circle">fr.profi.mzdb.io.reader.bb.<a href="fr/profi/mzdb/io/reader/bb/IBlobReader.html" title="interface in fr.profi.mzdb.io.reader.bb"><span class="typeNameLink">IBlobReader</span></a></li>
<li type="circle">fr.profi.mzdb.model.<a href="fr/profi/mzdb/model/ILcContext.html" title="interface in fr.profi.mzdb.model"><span class="typeNameLink">ILcContext</span></a></li>
<li type="circle">fr.profi.mzdb.db.model.<a href="fr/profi/mzdb/db/model/IMzDBParamNameGetter.html" title="interface in fr.profi.mzdb.db.model"><span class="typeNameLink">IMzDBParamNameGetter</span></a></li>
<li type="circle">io.github.msdk.datamodel.<a href="io/github/msdk/datamodel/IonAnnotation.html" title="interface in io.github.msdk.datamodel"><span class="typeNameLink">IonAnnotation</span></a></li>
<li type="circle">io.github.msdk.datamodel.<a href="io/github/msdk/datamodel/IonType.html" title="interface in io.github.msdk.datamodel"><span class="typeNameLink">IonType</span></a></li>
<li type="circle">fr.profi.mzdb.db.model.params.<a href="fr/profi/mzdb/db/model/params/IParamContainer.html" title="interface in fr.profi.mzdb.db.model.params"><span class="typeNameLink">IParamContainer</span></a></li>
<li type="circle">fr.profi.mzdb.io.writer.mgf.<a href="fr/profi/mzdb/io/writer/mgf/IPrecursorComputation.html" title="interface in fr.profi.mzdb.io.writer.mgf"><span class="typeNameLink">IPrecursorComputation</span></a></li>
<li type="circle">io.github.msdk.datamodel.<a href="io/github/msdk/datamodel/IsolationInfo.html" title="interface in io.github.msdk.datamodel"><span class="typeNameLink">IsolationInfo</span></a></li>
<li type="circle">fr.profi.mzdb.util.sqlite.<a href="fr/profi/mzdb/util/sqlite/ISQLiteConnectionFunction.html" title="interface in fr.profi.mzdb.util.sqlite"><span class="typeNameLink">ISQLiteConnectionFunction</span></a><T></li>
<li type="circle">fr.profi.mzdb.util.sqlite.<a href="fr/profi/mzdb/util/sqlite/ISQLiteRecordExtraction.html" title="interface in fr.profi.mzdb.util.sqlite"><span class="typeNameLink">ISQLiteRecordExtraction</span></a><T></li>
<li type="circle">fr.profi.mzdb.util.sqlite.<a href="fr/profi/mzdb/util/sqlite/ISQLiteRecordOperation.html" title="interface in fr.profi.mzdb.util.sqlite"><span class="typeNameLink">ISQLiteRecordOperation</span></a></li>
<li type="circle">fr.profi.mzdb.util.sqlite.<a href="fr/profi/mzdb/util/sqlite/ISQLiteStatementConsumer.html" title="interface in fr.profi.mzdb.util.sqlite"><span class="typeNameLink">ISQLiteStatementConsumer</span></a></li>
<li type="circle">fr.profi.mzdb.io.reader.iterator.<a href="fr/profi/mzdb/io/reader/iterator/IStatementExtractor.html" title="interface in fr.profi.mzdb.io.reader.iterator"><span class="typeNameLink">IStatementExtractor</span></a><T></li>
<li type="circle">fr.profi.mzdb.util.lambda.<a href="fr/profi/mzdb/util/lambda/JavaStreamExceptionWrappers.html" title="interface in fr.profi.mzdb.util.lambda"><span class="typeNameLink">JavaStreamExceptionWrappers</span></a></li>
<li type="circle">io.github.msdk.spectra.centroiding.<a href="io/github/msdk/spectra/centroiding/MSDKCentroidingAlgorithm.html" title="interface in io.github.msdk.spectra.centroiding"><span class="typeNameLink">MSDKCentroidingAlgorithm</span></a></li>
<li type="circle">io.github.msdk.rawdata.filters.<a href="io/github/msdk/rawdata/filters/MSDKFilteringAlgorithm.html" title="interface in io.github.msdk.rawdata.filters"><span class="typeNameLink">MSDKFilteringAlgorithm</span></a></li>
<li type="circle">io.github.msdk.<a href="io/github/msdk/MSDKMethod.html" title="interface in io.github.msdk"><span class="typeNameLink">MSDKMethod</span></a><ResultType></li>
<li type="circle">io.github.msdk.spectra.similarity.<a href="io/github/msdk/spectra/similarity/MSDKSpectraComparisonAlgorithm.html" title="interface in io.github.msdk.spectra.similarity"><span class="typeNameLink">MSDKSpectraComparisonAlgorithm</span></a></li>
<li type="circle">io.github.msdk.datamodel.<a href="io/github/msdk/datamodel/MsSpectrum.html" title="interface in io.github.msdk.datamodel"><span class="typeNameLink">MsSpectrum</span></a>
<ul>
<li type="circle">io.github.msdk.datamodel.<a href="io/github/msdk/datamodel/MsScan.html" title="interface in io.github.msdk.datamodel"><span class="typeNameLink">MsScan</span></a></li>
</ul>
</li>
<li type="circle">io.github.msdk.util.tolerances.<a href="io/github/msdk/util/tolerances/MzTolerance.html" title="interface in io.github.msdk.util.tolerances"><span class="typeNameLink">MzTolerance</span></a></li>
<li type="circle">io.github.msdk.spectra.peakinvestigator.providers.<a href="io/github/msdk/spectra/peakinvestigator/providers/PeakInvestigatorProvider.html" title="interface in io.github.msdk.spectra.peakinvestigator.providers"><span class="typeNameLink">PeakInvestigatorProvider</span></a>
<ul>
<li type="circle">io.github.msdk.spectra.peakinvestigator.providers.<a href="io/github/msdk/spectra/peakinvestigator/providers/PeakInvestigatorInitProvider.html" title="interface in io.github.msdk.spectra.peakinvestigator.providers"><span class="typeNameLink">PeakInvestigatorInitProvider</span></a></li>
<li type="circle">io.github.msdk.spectra.peakinvestigator.providers.<a href="io/github/msdk/spectra/peakinvestigator/providers/PeakInvestigatorOptionsProvider.html" title="interface in io.github.msdk.spectra.peakinvestigator.providers"><span class="typeNameLink">PeakInvestigatorOptionsProvider</span></a></li>
<li type="circle">io.github.msdk.spectra.peakinvestigator.providers.<a href="io/github/msdk/spectra/peakinvestigator/providers/PeakInvestigatorProjectProvider.html" title="interface in io.github.msdk.spectra.peakinvestigator.providers"><span class="typeNameLink">PeakInvestigatorProjectProvider</span></a></li>
</ul>
</li>
<li type="circle">io.github.msdk.spectra.peakinvestigator.providers.<a href="io/github/msdk/spectra/peakinvestigator/providers/PeakInvestigatorProviderFactory.html" title="interface in io.github.msdk.spectra.peakinvestigator.providers"><span class="typeNameLink">PeakInvestigatorProviderFactory</span></a></li>
<li type="circle">io.github.msdk.datamodel.<a href="io/github/msdk/datamodel/RawDataFile.html" title="interface in io.github.msdk.datamodel"><span class="typeNameLink">RawDataFile</span></a></li>
<li type="circle">io.github.msdk.datamodel.<a href="io/github/msdk/datamodel/Sample.html" title="interface in io.github.msdk.datamodel"><span class="typeNameLink">Sample</span></a></li>
</ul>
<h2 title="Enum Hierarchy">Enum Hierarchy</h2>
<ul>
<li type="circle">java.lang.<a href="https://docs.oracle.com/javase/8/docs/api/java/lang/Object.html?is-external=true" title="class or interface in java.lang"><span class="typeNameLink">Object</span></a>
<ul>
<li type="circle">java.lang.<a href="https://docs.oracle.com/javase/8/docs/api/java/lang/Enum.html?is-external=true" title="class or interface in java.lang"><span class="typeNameLink">Enum</span></a><E> (implements java.lang.<a href="https://docs.oracle.com/javase/8/docs/api/java/lang/Comparable.html?is-external=true" title="class or interface in java.lang">Comparable</a><T>, java.io.<a href="https://docs.oracle.com/javase/8/docs/api/java/io/Serializable.html?is-external=true" title="class or interface in java.io">Serializable</a>)
<ul>
<li type="circle">io.github.msdk.util.<a href="io/github/msdk/util/DataPointSorter.SortingProperty.html" title="enum in io.github.msdk.util"><span class="typeNameLink">DataPointSorter.SortingProperty</span></a></li>
<li type="circle">io.github.msdk.util.<a href="io/github/msdk/util/DataPointSorter.SortingDirection.html" title="enum in io.github.msdk.util"><span class="typeNameLink">DataPointSorter.SortingDirection</span></a></li>
<li type="circle">io.github.msdk.util.<a href="io/github/msdk/util/ChromatogramUtil.CalculationMethod.html" title="enum in io.github.msdk.util"><span class="typeNameLink">ChromatogramUtil.CalculationMethod</span></a></li>
<li type="circle">io.github.msdk.datamodel.<a href="io/github/msdk/datamodel/SeparationType.html" title="enum in io.github.msdk.datamodel"><span class="typeNameLink">SeparationType</span></a></li>
<li type="circle">io.github.msdk.datamodel.<a href="io/github/msdk/datamodel/PolarityType.html" title="enum in io.github.msdk.datamodel"><span class="typeNameLink">PolarityType</span></a></li>
<li type="circle">io.github.msdk.datamodel.<a href="io/github/msdk/datamodel/MsSpectrumType.html" title="enum in io.github.msdk.datamodel"><span class="typeNameLink">MsSpectrumType</span></a></li>
<li type="circle">io.github.msdk.datamodel.<a href="io/github/msdk/datamodel/MsScanType.html" title="enum in io.github.msdk.datamodel"><span class="typeNameLink">MsScanType</span></a></li>
<li type="circle">io.github.msdk.datamodel.<a href="io/github/msdk/datamodel/FileType.html" title="enum in io.github.msdk.datamodel"><span class="typeNameLink">FileType</span></a></li>
<li type="circle">io.github.msdk.datamodel.<a href="io/github/msdk/datamodel/ChromatogramType.html" title="enum in io.github.msdk.datamodel"><span class="typeNameLink">ChromatogramType</span></a></li>
<li type="circle">io.github.msdk.datamodel.<a href="io/github/msdk/datamodel/ActivationType.html" title="enum in io.github.msdk.datamodel"><span class="typeNameLink">ActivationType</span></a></li>
<li type="circle">io.github.msdk.normalization.compound.<a href="io/github/msdk/normalization/compound/NormalizationType.html" title="enum in io.github.msdk.normalization.compound"><span class="typeNameLink">NormalizationType</span></a></li>
<li type="circle">io.github.msdk.io.mzml.data.<a href="io/github/msdk/io/mzml/data/MzMLCompressionType.html" title="enum in io.github.msdk.io.mzml.data"><span class="typeNameLink">MzMLCompressionType</span></a></li>
<li type="circle">io.github.msdk.io.mzml.data.<a href="io/github/msdk/io/mzml/data/MzMLBitLength.html" title="enum in io.github.msdk.io.mzml.data"><span class="typeNameLink">MzMLBitLength</span></a></li>
<li type="circle">io.github.msdk.io.mzml.data.<a href="io/github/msdk/io/mzml/data/MzMLArrayType.html" title="enum in io.github.msdk.io.mzml.data"><span class="typeNameLink">MzMLArrayType</span></a></li>
<li type="circle">fr.profi.mzdb.<a href="fr/profi/mzdb/XicMethod.html" title="enum in fr.profi.mzdb"><span class="typeNameLink">XicMethod</span></a></li>
<li type="circle">fr.profi.mzdb.io.writer.mgf.<a href="fr/profi/mzdb/io/writer/mgf/PrecursorMzComputationEnum.html" title="enum in fr.profi.mzdb.io.writer.mgf"><span class="typeNameLink">PrecursorMzComputationEnum</span></a></li>
<li type="circle">fr.profi.mzdb.io.writer.mgf.<a href="fr/profi/mzdb/io/writer/mgf/MgfField.html" title="enum in fr.profi.mzdb.io.writer.mgf"><span class="typeNameLink">MgfField</span></a></li>
<li type="circle">fr.profi.mzdb.model.<a href="fr/profi/mzdb/model/PeakEncoding.html" title="enum in fr.profi.mzdb.model"><span class="typeNameLink">PeakEncoding</span></a></li>
<li type="circle">fr.profi.mzdb.model.<a href="fr/profi/mzdb/model/DataMode.html" title="enum in fr.profi.mzdb.model"><span class="typeNameLink">DataMode</span></a></li>
<li type="circle">fr.profi.mzdb.model.<a href="fr/profi/mzdb/model/AcquisitionMode.html" title="enum in fr.profi.mzdb.model"><span class="typeNameLink">AcquisitionMode</span></a></li>
<li type="circle">fr.profi.mzdb.db.table.<a href="fr/profi/mzdb/db/table/TableParamTreeSchemaTable.html" title="enum in fr.profi.mzdb.db.table"><span class="typeNameLink">TableParamTreeSchemaTable</span></a></li>
<li type="circle">fr.profi.mzdb.db.table.<a href="fr/profi/mzdb/db/table/SpectrumTable.html" title="enum in fr.profi.mzdb.db.table"><span class="typeNameLink">SpectrumTable</span></a></li>
<li type="circle">fr.profi.mzdb.db.table.<a href="fr/profi/mzdb/db/table/SourceFileTable.html" title="enum in fr.profi.mzdb.db.table"><span class="typeNameLink">SourceFileTable</span></a></li>
<li type="circle">fr.profi.mzdb.db.table.<a href="fr/profi/mzdb/db/table/SourceFileScanSettingsMapTable.html" title="enum in fr.profi.mzdb.db.table"><span class="typeNameLink">SourceFileScanSettingsMapTable</span></a></li>
<li type="circle">fr.profi.mzdb.db.table.<a href="fr/profi/mzdb/db/table/SoftwareTable.html" title="enum in fr.profi.mzdb.db.table"><span class="typeNameLink">SoftwareTable</span></a></li>
<li type="circle">fr.profi.mzdb.db.table.<a href="fr/profi/mzdb/db/table/SharedParamTreeTable.html" title="enum in fr.profi.mzdb.db.table"><span class="typeNameLink">SharedParamTreeTable</span></a></li>
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