test_notebook.yml

# This workflow will install Python dependencies, run tests and lint with a variety of Python versions
# For more information see: https://docs.github.com/en/actions/automating-builds-and-tests/building-and-testing-python

name: "Notebook Pipeline (Ubuntu)"

on:
  pull_request:
    branches: 
      - main
      - NG20

jobs:
  build:
    runs-on: ${{ matrix.os }}
    strategy:
      fail-fast: false
      matrix:
        os: [ubuntu-latest] # Once we get the tex packages changed, we should include "macos-13"
        python-version: ["3.9", "3.10", "3.11", "3.12"]

    steps:
    - name: Install Required Ubuntu Packages
      run: |
        sudo apt-get update
        sudo apt-get install texlive-latex-base cm-super-minimal pdftk latex2html
    - uses: actions/checkout@v4
    - uses: mamba-org/setup-micromamba@v1
      with:
          init-shell: bash
          environment-name: pulsar
          cache-environment: true
          cache-downloads: true
          create-args: >-
            -c conda-forge
            python=${{ matrix.python-version }}
            pytest
            cython
            pint-pulsar
            tempo2
            libstempo
            enterprise-pulsar
            enterprise_extensions
            scikit-sparse
            scikit-learn
            ruamel.yaml
            nbconvert
            ipywidgets>=7.6.3
            weasyprint
            pytest-xdist>=2.3.0
            jupyter
            seaborn
            gitpython
    - name: Install Main Code
      shell: bash -el {0}
      run: |
        pip install -e .
    - name: Test with Standard Pulsar
      shell: bash -el {0}
      run: |
        export PULSAR_NAME='J0605+3757'
        export JUPYTER_PLATFORM_DIRS=1
        pytest tests/test_run_notebook.py -k $PULSAR_NAME
        ls -lah
        mv tmp* nb_outputs
    - name: Archive Notebook Output Files
      uses: actions/upload-artifact@v4
      with:
        name: TestNB-OutputFiles_${{ matrix.python-version }}_${{ matrix.os }}_${{ steps.date.outputs.date }}
        path: |
          nb_outputs/*/*.pdf
          nb_outputs/*/*.tim
          nb_outputs/*/*.par
        compression-level: 6