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Edit distance plots for mapped reads #1101

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marcel-keller opened this issue Dec 6, 2024 · 1 comment

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marcel-keller commented Dec 6, 2024

Dear nf-core/eager team,

For the the next version of eager, it would be great if there would be an option to generate edit distance plots for mapped reads (at least for procaryotic genomes). As an example:
https://github.com/MeriamGuellil/ED-NM_CSV
for the calculations
https://github.com/MeriamGuellil/aDNA-BAMPlotter
for the plotting

Thanks!
Marcel

marcel-keller added the enhancement label

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jfy133 commented Dec 6, 2024

This indeed would be nice! But we would need a tool packaged on bioconda to add to the pipeline

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