From e71c5bdad65acb37333bcfb89b3395d7478b2d9d Mon Sep 17 00:00:00 2001 From: Thomas Schaffter Date: Mon, 13 Sep 2021 14:28:07 -0700 Subject: [PATCH] Add performance dashboards to PHI leaderboard pages (#157) --- wiki/608039-DateAnnotationLeaderboard.md | 2 +- wiki/608040-PersonNameAnnotationLeaderboard.md | 2 +- wiki/608041-LocationAnnotationLeaderboard.md | 8 +++----- wiki/611107-IdAnnotationLeaderboard.md | 3 +-- wiki/611108-ContactAnnotationLeaderboard.md | 3 +-- 5 files changed, 7 insertions(+), 11 deletions(-) diff --git a/wiki/608039-DateAnnotationLeaderboard.md b/wiki/608039-DateAnnotationLeaderboard.md index 3225e46..0934d70 100644 --- a/wiki/608039-DateAnnotationLeaderboard.md +++ b/wiki/608039-DateAnnotationLeaderboard.md @@ -4,7 +4,7 @@ ### Annotation Location - +${preview?entityId=syn26165068} ${synapsetable?query=select id as "Submission Id"%2C createdOn as "CreatedOn"%2C submitterid as Submitter%2C tool%5F%5Fapi%5Fversion as "NLP Sandbox Version"%2C location%5FF1%5Ftoken%5Fstrict as "i2b2 Score"%2C MCW%5Flocation%5FF1%5Ftoken%5Fstrict as "MCW score"%2C tool%5F%5Fname as "Tool Name"%2C tool%5F%5Fversion as "Tool Version"%2C tool%5F%5Furl as "Tool URL"%2C tool%5F%5Fdescription as "Tool Description"%2C tool%5F%5Flicense as "License"%2C dockerrepositoryname as "Image"%2C dockerdigest as "Image Digest"%2C dataset%5Fname as "i2b2 dataset"%2C dataset%5Fversion as "i2b2 dataset version"%2C MCW%5Fdataset%5Fname as "MCW dataset name"%2C MCW%5Fdataset%5Fversion as "MCW dataset version" from syn23747126 where evaluationid %3D9614652 and status %3D %27ACCEPTED%27 and MCW%5Fsubmission%5Fstatus %3D %27SCORED%27&showquery=false} diff --git a/wiki/608040-PersonNameAnnotationLeaderboard.md b/wiki/608040-PersonNameAnnotationLeaderboard.md index 3ac26a6..e320861 100644 --- a/wiki/608040-PersonNameAnnotationLeaderboard.md +++ b/wiki/608040-PersonNameAnnotationLeaderboard.md @@ -4,7 +4,7 @@ ### Annotation Location - +${preview?entityId=syn26165069} ${synapsetable?query=select id as "Submission Id"%2C createdOn as "CreatedOn"%2C submitterid as Submitter%2C tool%5F%5Fapi%5Fversion as "NLP Sandbox Version"%2C location%5FF1%5Ftoken%5Fstrict as "i2b2 Score"%2C MCW%5Flocation%5FF1%5Ftoken%5Fstrict as "MCW score"%2C tool%5F%5Fname as "Tool Name"%2C tool%5F%5Fversion as "Tool Version"%2C tool%5F%5Furl as "Tool URL"%2C tool%5F%5Fdescription as "Tool Description"%2C tool%5F%5Flicense as "License"%2C dockerrepositoryname as "Image"%2C dockerdigest as "Image Digest"%2C dataset%5Fname as "i2b2 dataset"%2C dataset%5Fversion as "i2b2 dataset version"%2C MCW%5Fdataset%5Fname as "MCW dataset name"%2C MCW%5Fdataset%5Fversion as "MCW dataset version" from syn23747126 where evaluationid %3D9614657 and status %3D %27ACCEPTED%27 and MCW%5Fsubmission%5Fstatus %3D %27SCORED%27&showquery=false} diff --git a/wiki/608041-LocationAnnotationLeaderboard.md b/wiki/608041-LocationAnnotationLeaderboard.md index 389bca3..1e219e2 100644 --- a/wiki/608041-LocationAnnotationLeaderboard.md +++ b/wiki/608041-LocationAnnotationLeaderboard.md @@ -2,15 +2,13 @@ {row} {column width=12} -### Annotation Location and Type + - -${synapsetable?query=select id as "Submission Id"%2C createdOn as "CreatedOn"%2C submitterid as Submitter%2C tool%5F%5Fapi%5Fversion as "NLP Sandbox Version"%2C type%5FF1 as "i2b2 Score"%2C MCW%5Ftype%5FF1 as "MCW Score"%2C tool%5F%5Fname as "Tool Name"%2C tool%5F%5Fversion as "Tool Version"%2C tool%5F%5Furl as "Tool URL"%2C tool%5F%5Fdescription as "Tool Description"%2C tool%5F%5Flicense as "License"%2C dockerrepositoryname as "Image"%2C dockerdigest as "Image Digest"%2C dataset%5Fname as "i2b2 dataset"%2C dataset%5Fversion as "i2b2 dataset version"%2C MCW%5Fdataset%5Fname as "MCW dataset name"%2C MCW%5Fdataset%5Fversion as "MCW dataset version" from syn23747126 where evaluationid %3D 9614658 and status %3D%27ACCEPTED%27 and type%5FF1 is not null and MCW%5Fsubmission%5Fstatus %3D %27SCORED%27&showquery=false} +${synapsetable?query=select id as "Submission Id"%2C createdOn as "CreatedOn"%2C submitterid as Submitter%2C tool%5F%5Fapi%5Fversion as "NLP Sandbox Version"%2C type%5FF1 as "i2b2 Score"%2C MCW%5Ftype%5FF1 as "MCW Score"%2C tool%5F%5Fname as "Tool Name"%2C tool%5F%5Fversion as "Tool Version"%2C tool%5F%5Furl as "Tool URL"%2C tool%5F%5Fdescription as "Tool Description"%2C tool%5F%5Flicense as "License"%2C dockerrepositoryname as "Image"%2C dockerdigest as "Image Digest"%2C dataset%5Fname as "i2b2 dataset"%2C dataset%5Fversion as "i2b2 dataset version"%2C MCW%5Fdataset%5Fname as "MCW dataset name"%2C MCW%5Fdataset%5Fversion as "MCW dataset version" from syn23747126 where evaluationid %3D 9614658 and status %3D%27ACCEPTED%27 and type%5FF1 is not null and MCW%5Fsubmission%5Fstatus %3D %27SCORED%27&showquery=false} --> ### Annotation Location - +${preview?entityId=syn26165072} ${synapsetable?query=select id as "Submission Id"%2C createdOn as "CreatedOn"%2C submitterid as Submitter%2C tool%5F%5Fapi%5Fversion as "NLP Sandbox Version"%2C location%5FF1%5Ftoken%5Fstrict as "i2b2 Score"%2C MCW%5Flocation%5FF1%5Ftoken%5Fstrict as "MCW score"%2C tool%5F%5Fname as "Tool Name"%2C tool%5F%5Fversion as "Tool Version"%2C tool%5F%5Furl as "Tool URL"%2C tool%5F%5Fdescription as "Tool Description"%2C tool%5F%5Flicense as "License"%2C dockerrepositoryname as "Image"%2C dockerdigest as "Image Digest"%2C dataset%5Fname as "i2b2 dataset"%2C dataset%5Fversion as "i2b2 dataset version"%2C MCW%5Fdataset%5Fname as "MCW dataset name"%2C MCW%5Fdataset%5Fversion as "MCW dataset version" from syn23747126 where evaluationid %3D9614658 and status %3D %27ACCEPTED%27 and MCW%5Fsubmission%5Fstatus %3D %27SCORED%27&showquery=false} diff --git a/wiki/611107-IdAnnotationLeaderboard.md b/wiki/611107-IdAnnotationLeaderboard.md index f2d9e8d..a0ab7e8 100644 --- a/wiki/611107-IdAnnotationLeaderboard.md +++ b/wiki/611107-IdAnnotationLeaderboard.md @@ -4,7 +4,7 @@ ### Annotation Location - +${preview?entityId=syn26165071} ${synapsetable?query=select id as "Submission Id"%2C createdOn as "CreatedOn"%2C submitterid as Submitter%2C tool%5F%5Fapi%5Fversion as "NLP Sandbox Version"%2C location%5FF1%5Ftoken%5Fstrict as "i2b2 Score"%2C MCW%5Flocation%5FF1%5Ftoken%5Fstrict as "MCW score"%2C tool%5F%5Fname as "Tool Name"%2C tool%5F%5Fversion as "Tool Version"%2C tool%5F%5Furl as "Tool URL"%2C tool%5F%5Fdescription as "Tool Description"%2C tool%5F%5Flicense as "License"%2C dockerrepositoryname as "Image"%2C dockerdigest as "Image Digest"%2C dataset%5Fname as "i2b2 dataset"%2C dataset%5Fversion as "i2b2 dataset version"%2C MCW%5Fdataset%5Fname as "MCW dataset name"%2C MCW%5Fdataset%5Fversion as "MCW dataset version" from syn23747126 where evaluationid %3D9614797 and status %3D %27ACCEPTED%27 and MCW%5Fsubmission%5Fstatus %3D %27SCORED%27&showquery=false} @@ -15,6 +15,5 @@ ${synapsetable?query=select id as "Submission Id"%2C createdOn as "CreatedOn"%2C - Latest version of the MCW dataset: `mcwdataset-20210525` - Score definition: `F1 Score (token level)` - {column} {row} diff --git a/wiki/611108-ContactAnnotationLeaderboard.md b/wiki/611108-ContactAnnotationLeaderboard.md index 258148a..da38aa6 100644 --- a/wiki/611108-ContactAnnotationLeaderboard.md +++ b/wiki/611108-ContactAnnotationLeaderboard.md @@ -4,11 +4,10 @@ ### Annotation Location - +${preview?entityId=syn26165070} ${synapsetable?query=select id as "Submission Id"%2C createdOn as "CreatedOn"%2C submitterid as Submitter%2C tool%5F%5Fapi%5Fversion as "NLP Sandbox Version"%2C location%5FF1%5Ftoken%5Fstrict as "i2b2 Score"%2C MCW%5Flocation%5FF1%5Ftoken%5Fstrict as "MCW score"%2C tool%5F%5Fname as "Tool Name"%2C tool%5F%5Fversion as "Tool Version"%2C tool%5F%5Furl as "Tool URL"%2C tool%5F%5Fdescription as "Tool Description"%2C tool%5F%5Flicense as "License"%2C dockerrepositoryname as "Image"%2C dockerdigest as "Image Digest"%2C dataset%5Fname as "i2b2 dataset"%2C dataset%5Fversion as "i2b2 dataset version"%2C MCW%5Fdataset%5Fname as "MCW dataset name"%2C MCW%5Fdataset%5Fversion as "MCW dataset version" from syn23747126 where evaluationid %3D9614799 and status %3D %27ACCEPTED%27 and MCW%5Fsubmission%5Fstatus %3D %27SCORED%27&showquery=false} - ### Additional Information - Latest schema version: `1.2.0`