.gitignore

zebrazoom/__pycache__/
zebrazoom/code/GUI/__pycache__/
zebrazoom/code/__pycache__/
zebrazoom/code/getImage/__pycache__/
zebrazoom/code/trackingFolder/__pycache__/
zebrazoom/code/trackingFolder/headTrackingHeadingCalculationFolder/__pycache__/
zebrazoom/code/trackingFolder/eyeTracking/__pycache__/
zebrazoom/code/trackingFolder/tailTrackingFunctionsFolder/__pycache__/
zebrazoom/code/trackingFolder/tailTrackingFunctionsFolder/tailTrackingExtremityDetectFolder/__pycache__/
zebrazoom/code/trackingFolder/tailTrackingFunctionsFolder/tailTrackingExtremityDetectFolder/findTailExtremeteFolder/__pycache__/
zebrazoom/code/vars/__pycache__/
zebrazoom/dataAnalysis/dataanalysis/__pycache__/
zebrazoom/dataAnalysis/datasetcreation/__pycache__/
zebrazoom/dataAnalysis/__pycache__
zebrazoom/videoFormatConversion/__pycache__
zebrazoom/code/dataPostProcessing/__pycache__/
zebrazoom/dataAnalysis/postProcessingFromCommandLine/__pycache__/
zebrazoom/code/deepLearningFunctions/__pycache__
zebrazoom/code/deepLearningFunctions/PyTorchFunctions/__pycache__/
zebrazoom/otherScripts/__pycache__/
zebrazoom/dataAnalysis/createCustomDataStructure/__pycache__/
zebrazoom/code/trackingFolder/refactoredCode2022/__pycache__/
zebrazoom/trackingConfigurations/__pycache__/
zebrazoom/code/tracking/customTrackingImplementations/fastFishTracking/__pycache__/
zebrazoom/code/GUI/tracking/customTrackingImplementations/fastFishTracking/__pycache__/tracking.cpython-38.pyc
zebrazoom/code/tracking/customTrackingImplementations/multipleCenterOfMassTracking/__pycache__/

zebrazoom/code/GUI/tracking/__pycache__/
zebrazoom/code/GUI/tracking/customTrackingImplementations/__pycache__/
zebrazoom/code/GUI/tracking/customTrackingImplementations/examples/__pycache__/
zebrazoom/code/tracking/__pycache__/
zebrazoom/code/tracking/customTrackingImplementations/__pycache__/
zebrazoom/code/tracking/customTrackingImplementations/examples/__pycache__/
zebrazoom/dataAPI/__pycache__/

zebrazoom/trackingConfigurations/*.csv
zebrazoom/rolloverConfigurations/

zebrazoom/newhyperparameters
zebrazoom/trace.txt

zebrazoom/ZZoutput/
!zebrazoom/ZZoutput/standardValueFreelySwimZebrafishLarvae
!zebrazoom/ZZoutput/example1/configUsed.json
!zebrazoom/ZZoutput/example1/results_example1.txt
!zebrazoom/ZZoutput/example2/configUsed.json
!zebrazoom/ZZoutput/example2/results_example2.txt
!zebrazoom/ZZoutput/example3/configUsed.json
!zebrazoom/ZZoutput/example3/results_example3.txt

MANIFEST
dist/
zebrazoom.egg-info/

zebrazoom/configuration/
!zebrazoom/configuration/4wellsZebrafishLarvaeEscapeResponses.json
!zebrazoom/configuration/fliesInTube.json
!zebrazoom/configuration/headEmbeddedZebrafishLarva.json
!zebrazoom/configuration/screenFastTrackingConfigFileTemplate.json
!zebrazoom/configuration/testThresholdsForFastScreen.json
!zebrazoom/configuration/toCreateConfigFileForBarelyMovingAnimals.json
!zebrazoom/configuration/barelyMovingFish.json
!zebrazoom/configuration/noPreProcessingOfImageForBoutDetection.json
!zebrazoom/configuration/invertColorsForHeadEmbeddedEyeTracking.json
!zebrazoom/configuration/invertBlackWhiteOnImages.json

zebrazoom/rolloverDetectionConfiguration/

zebrazoom/dataAnalysis/classifiers/*
zebrazoom/dataAnalysis/data/*
zebrazoom/dataAnalysis/experimentOrganizationExcel/*
zebrazoom/dataAnalysis/resultsClustering/*
zebrazoom/dataAnalysis/resultsKinematic/*
zebrazoom/dataAnalysis/analysisScriptsForProjects/

prepRepo.sh
trace.txt

launch*.sh
*Launch.sh

*_paramSet
*_config.json
*_config_old.json
*_configOld.json
newhyperparameters

experimentWithAutomaticOptimalParamSearch.py

pypiUpload.sh

build

zebrazoom/dataAnalysis/postProcessingClusteringResults

scoresComparaison*.pkl
scoresComparaison*.png

zebrazoom/code/deepLearningFunctions/unetModel/__pycache__

readAndAnalyzeZZoutputWithPython/framesKept*.xlsx
framesKept*.xlsx

goodTracking.pkl

goodTrackingInterSaved.pkl
goodTrackingSaved.pkl

readAndAnalyzeZZoutputWithPython/*.png
readAndAnalyzeZZoutputWithPython/*.csv
readAndAnalyzeZZoutputWithPython/*.pkl
readAndAnalyzeZZoutputWithPython/*.svg

zebrazoom/code/GUI/tracking/customTrackingImplementations/fastFishTracking/__pycache__

zebrazoom/code/tracking/customTrackingImplementations/yolov5/
runs/

zebrazoom/code/tracking/customTrackingImplementations/yolov11/__pycache__

zebrazoom/code/GUI/tracking/customTrackingImplementations/multipleCenterOfMassTracking/__pycache__

DLrelatedFiles/__pycache__

otherScripts/reassignMultipleAnimalsIds_Chica.py
otherScripts/reassignMultipleAnimalsIds_Sabinos.py