Big Data Biology Lab

All

35 repositories

argNorm
Public
ARG normalization by mapping to the ARO ontology.
antibiotic-resistance bioinformatics
Python
•
MIT License
•5•29•2•1•Updated Jan 20, 2025Jan 20, 2025
big-data-biology_org
Public
Elm
•16•1•0•4•Updated Jan 15, 2025Jan 15, 2025
SantosJunior_Torres_2024_AMPSphere_v1
Public
Figures and files used in the AMPSphere manuscript
Python
•
MIT License
•2•4•0•0•Updated Jan 2, 2025Jan 2, 2025
SemiBin
Public
SemiBin: metagenomics binning with self-supervised deep learning
bioinformatics deep-learning metagenomics self-supervised-learning assembly-binning
Python
•12•122•24•1•Updated Dec 6, 2024Dec 6, 2024
magsview
Public
Elm
•
MIT License
•1•0•0•0•Updated Dec 1, 2024Dec 1, 2024
macrel
Public
Predict AMPs in (meta)genomes and peptides
bioinformatics genomics biology metagenomics ngless peptide
Python
•
Other
•9•73•1•0•Updated Nov 27, 2024Nov 27, 2024
GMSC-mapper
Public
bioinformatics microbiome gmsc small-proteins
Python
•
MIT License
•4•8•0•0•Updated Nov 26, 2024Nov 26, 2024
sardyne
Public
Python
•
MIT License
•2•2•0•0•Updated Sep 30, 2024Sep 30, 2024
GMSC_website
Public
GMSC Frontend
bioinformatics microbiome gmsc small-proteins
Elm
•
MIT License
•2•0•0•0•Updated Sep 25, 2024Sep 25, 2024
AMPSphereFrontend
Public
Bikeshed
•4•0•0•0•Updated Sep 21, 2024Sep 21, 2024
Duan2024__GMSCv1_Construction_And_Analysis
Public
Jupyter Notebook
•
MIT License
•1•0•0•0•Updated Jul 28, 2024Jul 28, 2024
argNorm_benchmark
Public
Benchmark repo for argNorm
Python
•2•0•0•0•Updated Jul 20, 2024Jul 20, 2024
AMPSphereBackend
Public
Python
•
MIT License
•0•0•0•0•Updated Jun 28, 2024Jun 28, 2024
GMSC-api
Public
bioinformatics gmsc small-proteins
Python
•2•0•0•0•Updated Jun 4, 2024Jun 4, 2024
BigDataBiology.markdown_manuscript
Public
Simple template for BDB-Lab manuscripts
TeX
•
MIT License
•0•0•0•0•Updated May 28, 2024May 28, 2024
talk-tips-n-tricks-large-python
Public
Tips & tricks for large scale processing with Python
HTML
•5•1•0•0•Updated May 8, 2024May 8, 2024
co-args
Public
Python
•
MIT License
•0•4•0•0•Updated Apr 30, 2024Apr 30, 2024
SemiBin_tutorial
Public
1•1•0•0•Updated Apr 19, 2024Apr 19, 2024
long-read-magic
Public
A website to visualise and download MAGs obtained from long read sequencing.
BrighterScript
•
Other
•6•0•0•0•Updated Mar 25, 2024Mar 25, 2024
SemiBin_benchmark
Public
Python
•
MIT License
•2•3•0•0•Updated Mar 21, 2024Mar 21, 2024
SemiBin2_benchmark
Public
Python
•
MIT License
•0•6•0•0•Updated Mar 21, 2024Mar 21, 2024
arg-compare
Public
Python
•3•2•0•0•Updated Feb 5, 2024Feb 5, 2024
VideoTutorials
Public
Supporting material for YouTube tutorials
python bioinformatics tutorials microbiome
Python
•1•1•0•0•Updated Jan 4, 2024Jan 4, 2024
fasta_reader
Public
Python
•1•1•0•0•Updated Dec 5, 2023Dec 5, 2023
macrel2020benchmark
Public archive
Python
•1•0•0•0•Updated Nov 12, 2022Nov 12, 2022
AMPSphereWebsite
Public archive
Website for global antimicrobial peptides.
website antimicrobial-peptides
MIT License
•2•0•6•0•Updated Nov 7, 2022Nov 7, 2022
quick_amr_db_harmonisation
Public
Quick dirty way of mapping ResFinder(FG), DeepARG, SARG, and NCBI AMR databases to CARD's ARO
Python
•
GNU General Public License v3.0
•2•1•1•0•Updated May 31, 2022May 31, 2022
GMGC-mapper
Public
python genome metagenomics bioinformatics
Python
•6•6•1•0•Updated May 16, 2022May 16, 2022
ena-mirror
Public
Mirror selected ENA data locally
python bioinformatics ena
Python
•3•3•0•0•Updated May 6, 2022May 6, 2022
ksplit
Public
Python
•3•0•0•0•Updated Apr 4, 2022Apr 4, 2022