Repositories list

• CCD

  Public
  Conditinal Clade Distribution package for BEAST 2

  Java

  •2•1•0•0•Updated Jan 23, 2025Jan 23, 2025

• CBAN

  Public
  releases of beast2 packaged zip files in a reliable location

  package-managerbeast2

  JavaScript

  •19•7•1•0•Updated Jan 23, 2025Jan 23, 2025

• beast2-site

  Public
  beast2 web development site

  jekyllbeast2

  HTML

  •6•2•3•0•Updated Jan 15, 2025Jan 15, 2025

• beast2

  Public
  Bayesian Evolutionary Analysis by Sampling Trees

  evolutionphylogeneticsbayesian-inference+ 3javabeastmcmc

  Java

  •

  GNU Lesser General Public License v2.1

  •84•245•184•0•Updated Jan 15, 2025Jan 15, 2025

• sampled-ancestors

  Public
  This BEAST2 package provides MCMC proposals and post-processing tools for sampling trees containing sampled ancestors

  bayesian-inferencemcmcbeast2+ 1java

  Java

  •

  GNU General Public License v3.0

  •11•7•6•3•Updated Dec 1, 2024Dec 1, 2024

• BeastFX

  Public
  GUIs for BEAST using Java FX to make things more pretty.

  Java

  •

  GNU Lesser General Public License v2.1

  •2•4•19•0•Updated Nov 18, 2024Nov 18, 2024

• CCD-Research

  Public
  Information, scripts and data of CCD research papers

  Python

  •0•0•0•0•Updated Oct 24, 2024Oct 24, 2024

• morph-models

  Public
  Models for dealing with morphological data

  beast2morphological-data

  Java

  •

  GNU Lesser General Public License v2.1

  •9•7•5•1•Updated Dec 10, 2023Dec 10, 2023

• benchmark

  Public
  BEAST benchmarking data

  Perl

  •1•1•1•0•Updated Jan 5, 2023Jan 5, 2023

• BEAST.app

  Public
  BEAST 2.7 package containing applications

  Java

  •0•0•0•0•Updated Oct 25, 2022Oct 25, 2022

• packages

  Public
  Released BEAST 2 packages

  2•0•0•0•Updated Aug 11, 2022Aug 11, 2022

• Covid4Island

  Public
  GNU General Public License v3.0

  •1•0•0•0•Updated Jun 21, 2021Jun 21, 2021

• beastshell

  Public
  BeanShell scripting for BEAST2

  Java

  •

  GNU Lesser General Public License v2.1

  •1•0•1•0•Updated Mar 22, 2018Mar 22, 2018

• TTBSP

  Public
  Materials for Taming the BEAST in the South Pacific

  TeX

  •0•0•0•0•Updated Jan 10, 2017Jan 10, 2017

• beast1to2

  Public
  Convert BEAST 1 XML for BEAST 2

  Java

  •0•0•1•0•Updated Dec 7, 2016Dec 7, 2016

• testXXX

  Public
  0•0•0•0•Updated Dec 4, 2016Dec 4, 2016

• NZGOT

  Public
  The toolkit to analyse various types of data collected from New Zealand Genomic Observatory project

  bioinformaticsjava

  Java

  •

  GNU General Public License v2.0

  •2•3•0•0•Updated Aug 8, 2016Aug 8, 2016

• beast2report

  Public
  Test report

  HTML

  •0•0•0•0•Updated Jun 1, 2016Jun 1, 2016

• VCF2Patterns

  Public
  Python

  •0•0•0•0•Updated Apr 19, 2016Apr 19, 2016

• phylodynamics

  Public
  For joint inference of genetic and epidemiological parameters. Repository has now moved to:

  0•1•0•0•Updated Oct 5, 2015Oct 5, 2015

• compevol-slides

  Public
  A repository of presentation materials for giving talks on computational evolution.

  0•0•0•0•Updated May 21, 2013May 21, 2013