Repositories list

• GAM_phaser

  Public
  Perl

  •0•0•0•0•Updated Jun 27, 2024Jun 27, 2024

• multiplex-gam-2023

  Public
  Analysis scripts for Multiplex-GAM paper (Beagrie, Thieme, Annunziatella et al. 2023)

  Jupyter Notebook

  •1•3•1•0•Updated Jun 24, 2024Jun 24, 2024

• Irastorza-Azcarate_Kukalev_Kempfer_2024

  Public
  Code used to plot the figures in "Extensive folding variability between homologous chromosomes in mammalian cells"

  Python

  •1•0•0•0•Updated May 29, 2024May 29, 2024

• MELTRONIC

  Public
  Detection of chromatin melting and condensation events in regions of interest from GAM data

  R

  •

  MIT License

  •1•0•0•0•Updated Mar 26, 2024Mar 26, 2024

• 3DOmics

  Public
  Shell

  •0•1•0•0•Updated Aug 29, 2023Aug 29, 2023

• gamtools

  Public
  Processing, quality control and analysis of GAM datsets

  pythonpython3python2+ 3high-throughput-sequencingmolecular-biologychromatin

  Python

  •

  Apache License 2.0

  •14•9•6•4•Updated Jun 13, 2023Jun 13, 2023

• gamtools-guix

  Public
  Guix channel definition for gamtools

  Scheme

  •1•1•0•0•Updated Oct 28, 2022Oct 28, 2022

• WinickNg_Kukalev_Harabula_Nature_2021

  Public
  Collection of supplementary data and code for the publication W. Winick-Ng, A. Kukalev, I. Harabula "Cell-type specialization is encoded by specific chromatin topologies" (2021) Nature

  Python

  •1•4•0•0•Updated May 16, 2022May 16, 2022

• 4DN_JAWG_H1

  Public
  R

  •1•0•0•0•Updated Jan 13, 2022Jan 13, 2022

• GAM_trans_cis_ratio

  Public
  Calculation of trans-cis NPMI ratios from GAM data

  R

  •

  MIT License

  •1•1•0•0•Updated Nov 26, 2021Nov 26, 2021

• Meltron

  Public
  a statistical framework to detect differences in chromatin contact density at genomic regions of interest

  R

  •

  MIT License

  •1•3•0•0•Updated Nov 26, 2021Nov 26, 2021