From b92084fc2f5b1f924a899ad5ec00269f89ef687e Mon Sep 17 00:00:00 2001 From: Ben Mares Date: Sun, 17 Dec 2023 11:41:51 -0800 Subject: [PATCH] Use conda-lock to create test environments --- .github/workflows/ci.yml | 19 +- .github/workflows/update-lockfile.yml | 73 + conda/conda-lock-3.10.yaml | 3135 ++++++++++++++++++++++++ conda/conda-lock-3.8.yaml | 3189 +++++++++++++++++++++++++ conda/conda-lock-3.9.yaml | 3162 ++++++++++++++++++++++++ conda/environment-conda-locker.yaml | 6 + conda/environment-test-3.10.yaml | 9 + conda/environment-test-3.11.yaml | 9 + conda/environment-test-3.12.yaml | 9 + conda/environment-test-3.8.yaml | 9 + conda/environment-test-3.9.yaml | 9 + 11 files changed, 9626 insertions(+), 3 deletions(-) create mode 100644 .github/workflows/update-lockfile.yml create mode 100644 conda/conda-lock-3.10.yaml create mode 100644 conda/conda-lock-3.8.yaml create mode 100644 conda/conda-lock-3.9.yaml create mode 100644 conda/environment-conda-locker.yaml create mode 100644 conda/environment-test-3.10.yaml create mode 100644 conda/environment-test-3.11.yaml create mode 100644 conda/environment-test-3.12.yaml create mode 100644 conda/environment-test-3.8.yaml create mode 100644 conda/environment-test-3.9.yaml diff --git a/.github/workflows/ci.yml b/.github/workflows/ci.yml index db618756..c7fd5665 100644 --- a/.github/workflows/ci.yml +++ b/.github/workflows/ci.yml @@ -6,6 +6,11 @@ on: push: branches: [main] +defaults: + run: + # Ensure activation for micromamba + shell: bash -leo pipefail {0} {0} + jobs: lint: runs-on: ubuntu-latest @@ -30,10 +35,18 @@ jobs: steps: - uses: actions/checkout@v3 - - name: Set up Python - uses: actions/setup-python@v3 + - name: Rename lockfile + run: | + mv conda/conda-lock-${{ matrix.python-version }}.yaml conda/conda-lock.yml + - uses: mamba-org/setup-micromamba@v1 with: - python-version: ${{ matrix.python-version }} + micromamba-version: 1.5.5-0 + environment-file: conda/conda-lock.yml + environment-name: causalpy-test-${{ matrix.python-version }} + cache-environment: true + create-args: >- + --category main + --category dev - name: Run doctests run: | pip install -e .[test] diff --git a/.github/workflows/update-lockfile.yml b/.github/workflows/update-lockfile.yml new file mode 100644 index 00000000..117720ff --- /dev/null +++ b/.github/workflows/update-lockfile.yml @@ -0,0 +1,73 @@ +name: Update lockfile + +on: + workflow_dispatch: + schedule: + # At 06:12 UTC on Monday + - cron: 12 6 * * MON + +jobs: + conda-lock: + strategy: + matrix: + python-version: ["3.8", "3.9", "3.10"] + defaults: + run: + # Ensure the environment is activated + # + shell: bash -l {0} + runs-on: ubuntu-latest + steps: + - uses: actions/checkout@v4 + - name: Install Conda environment with Micromamba + uses: mamba-org/setup-micromamba@v1 + with: + environment-file: conda/environment-conda-locker.yaml + environment-name: conda-lock-env + cache-environment: true + + - name: Run conda-lock + run: | + conda-lock lock --mamba \ + --extras test \ + --filter-extras \ + --file pyproject.toml \ + --file conda/environment-test-${{ matrix.python-version }}.yaml \ + --lockfile conda/conda-lock-${{ matrix.python-version }}.yaml + + - name: Upload lockfile + uses: actions/upload-artifact@v4 + with: + name: lockfile-${{ matrix.python-version }} + path: conda/conda-lock-${{ matrix.python-version }}.yaml + + open-pr: + needs: conda-lock + runs-on: ubuntu-latest + steps: + - name: Checkout repo + uses: actions/checkout@v4 + - name: Download all lockfiles + uses: actions/download-artifact@v4 + with: + path: /tmp/conda + - name: Replace existing lockfiles with downloaded ones + run: | + mv /tmp/conda/lockfile-*/* conda/ + - name: Open a pull request + uses: peter-evans/create-pull-request@v5 + with: + # This PAT should have read-write permissions for "Pull Requests" + # and read-write permissions for "Contents". + token: ${{ secrets.GH_PAT_FOR_PR }} + commit-message: Relock dependencies + title: Relock dependencies + body: > + This pull request relocks the dependencies with conda-lock. + It was created automatically with the GitHub Action + [update-lockfile.yml](.github/workflows/update-lockfile.yml). + branch: relock-deps + labels: conda-lock + delete-branch: true + committer: update-lockfile.yml + author: update-lockfile.yml diff --git a/conda/conda-lock-3.10.yaml b/conda/conda-lock-3.10.yaml new file mode 100644 index 00000000..4f7c4204 --- /dev/null +++ b/conda/conda-lock-3.10.yaml @@ -0,0 +1,3135 @@ +# This lock file was generated by conda-lock (https://github.com/conda/conda-lock). DO NOT EDIT! +# +# A "lock file" contains a concrete list of package versions (with checksums) to be installed. Unlike +# e.g. `conda env create`, the resulting environment will not change as new package versions become +# available, unless you explicitly update the lock file. +# +# Install this environment as "YOURENV" with: +# conda-lock install -n YOURENV --file conda-lock-3.10.yaml +# This lock contains optional development dependencies. Include them in the installed environment with: +# conda-lock install --dev-dependencies -n YOURENV --file conda-lock-3.10.yaml +# To update a single package to the latest version compatible with the version constraints in the source: +# conda-lock lock --lockfile conda-lock-3.10.yaml --update PACKAGE +# To re-solve the entire environment, e.g. after changing a version constraint in the source file: +# conda-lock -f ../pyproject.toml -f environment-test-3.10.yaml --lockfile conda-lock-3.10.yaml +version: 1 +metadata: + content_hash: + linux-64: 33b52b1b9e9da095571581a7df139fb0e4dead9eb9f91f535785cf004c8d272d + channels: + - url: conda-forge + used_env_vars: [] + platforms: + - linux-64 + sources: + - ../pyproject.toml + - environment-test-3.10.yaml +package: +- name: _libgcc_mutex + version: '0.1' + manager: conda + platform: linux-64 + dependencies: {} + url: https://conda.anaconda.org/conda-forge/linux-64/_libgcc_mutex-0.1-conda_forge.tar.bz2 + hash: + md5: 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