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selected_data.yaml
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datasets:
culture/jrc_cos7-1a:
contrast:
- 65
- 193
crops:
- crop234
- crop236
- crop237
- crop239
- crop248
- crop252
- crop253
- crop254
- crop256
- crop257
- crop292
raw: /nrs/cellmap/data/jrc_cos7-1a/jrc_cos7-1a.zarr/recon-1/em/fibsem-uint8
culture/jrc_cos7-1b:
contrast:
- 65
- 203
crops:
- crop235
- crop238
- crop240,crop291
- crop241
- crop242
- crop245
- crop249
- crop255
- crop258
- crop259
raw: /nrs/cellmap/data/jrc_cos7-1b/jrc_cos7-1b.zarr/recon-1/em/fibsem-uint8
culture/jrc_ctl-id8-1:
contrast:
- 45306
- 56865
crops:
- crop116
- crop117
- crop118
- crop119
- crop130
raw: /nrs/cellmap/data/jrc_ctl-id8-1/jrc_ctl-id8-1.zarr/recon-1/em/fibsem-uint16
culture/jrc_hela-2:
contrast:
- 89
- 207
crops:
- crop1
- crop3
- crop4
- crop6
- crop7
- crop8
- crop9
- crop13
- crop14
- crop15
- crop16
- crop18
- crop19
- crop23
- crop28
- crop54
- crop55
- crop56
- crop57
- crop58
- crop59
- crop94
- crop95
- crop96
- crop113
- crop155
raw: /nrs/cellmap/data/jrc_hela-2/jrc_hela-2.zarr/recon-1/em/fibsem-uint8
culture/jrc_hela-3:
contrast:
- 0
- 255
crops:
- crop27
- crop33
- crop34
- crop50
- crop51
- crop60
- crop61
- crop62
- crop63
- crop64
- crop65
- crop85
- crop86
- crop87
- crop100
- crop101,crop181
- crop102
- crop111
raw: /nrs/cellmap/data/jrc_hela-3/jrc_hela-3.zarr/recon-1/em/fibsem-uint8
culture/jrc_jurkat-1:
contrast:
- 202
- 238
crops:
- crop35
- crop36
- crop37
- crop38
- crop43
- crop47
- crop66
- crop67
- crop68
- crop69
- crop70
- crop71
- crop91
- crop92
- crop93
- crop107
- crop112
- crop126,crop180,crop182
raw: /nrs/cellmap/data/jrc_jurkat-1/jrc_jurkat-1.zarr/recon-1/em/fibsem-uint8
culture/jrc_macrophage-2:
contrast:
- 191
- 255
crops:
- crop31
- crop32
- crop39
- crop40
- crop42
- crop48
- crop49
- crop72
- crop73
- crop74
- crop75
- crop76
- crop77
- crop88
- crop89
- crop90
- crop109
- crop110
raw: /nrs/cellmap/data/jrc_macrophage-2/jrc_macrophage-2.zarr/recon-1/em/fibsem-uint8
culture/jrc_sum159-1:
contrast:
- 134
- 255
crops:
- crop20
- crop22
- crop25
- crop26
- crop81
- crop82
- crop80
- crop83
- crop84
- crop97
- crop98
- crop99
raw: /nrs/cellmap/data/jrc_sum159-1/jrc_sum159-1.zarr/recon-1/em/fibsem-uint8
culture/jrc_sum159-4:
contrast:
- 130
- 204
crops:
- crop202
- crop203
- crop213
- crop210
- crop206
- crop216
- crop208
- crop201
- crop212
- crop217
- crop218
- crop186
- crop187
- crop188
- crop209
- crop211
- crop189
- crop219
raw: /nrs/cellmap/data/jrc_sum159-4/jrc_sum159-4.zarr/recon-1/em/fibsem-uint8
tissue/brain/jrc_fly-vnc-1:
contrast:
- 158
- 233
crops:
- crop78
- crop79
- crop173,crop185
- crop174
- crop176
raw: /nrs/cellmap/data/jrc_fly-vnc-1/jrc_fly-vnc-1.zarr/recon-1/em/fibsem-uint8
tissue/brain/jrc_mb-1a:
contrast:
- 0
- 195
crops:
- crop120
- crop121
- crop122
- crop123
- crop134
- crop178
raw: /nrs/cellmap/data/jrc_mb-1a/jrc_mb-1a.zarr/recon-1/em/fibsem-uint8
tissue/brain/jrc_mus-nacc-1:
contrast:
- 0
- 255
crops:
- crop115
raw: /nrs/cellmap/data/jrc_mus-nacc-1/jrc_mus-nacc-1.zarr/recon-1/em/fibsem-uint8
tissue/other/jrc_mus-kidney:
contrast:
- 0
- 215
crops:
- crop129
- crop140
- crop141
- crop146
- crop147
- crop148
- crop149
- crop156
- crop158
- crop159
- crop160
- crop161
- crop162
- crop163
- crop164
- crop165
- crop166
- crop229
raw: /nrs/cellmap/data/jrc_mus-kidney/jrc_mus-kidney.zarr/recon-1/em/fibsem-uint8
tissue/other/jrc_mus-liver:
contrast:
- 0
- 194
crops:
- crop124
- crop125
- crop131
- crop132
- crop133
- crop135
- crop136
- crop137
- crop138
- crop139
- crop142
- crop143
- crop144
- crop145
- crop150
- crop151
- crop157,crop183
- crop171,crop416
- crop172,crop417
- crop175
raw: /nrs/cellmap/data/jrc_mus-liver/jrc_mus-liver.zarr/recon-1/em/fibsem-uint8
tissue/other/jrc_mus-liver-zon-1:
contrast:
- 8
- 219
crops:
- crop266
- crop267
- crop268
- crop269
- crop270
- crop272
- crop273
- crop274
- crop275
- crop276
- crop277
- crop278
- crop279
- crop280
- crop298
- crop313
- crop319
- crop320
- crop321
- crop322
- crop323
- crop325
- crop326
- crop377
raw: /nrs/cellmap/data/jrc_mus-liver-zon-1/jrc_mus-liver-zon-1.zarr/recon-1/em/fibsem-uint8
tissue/other/jrc_mus-liver-zon-2:
contrast:
- 0
- 205
crops:
- crop333
- crop340
- crop341
- crop342
- crop368
- crop369
- crop370
- crop376
raw: /nrs/cellmap/data/jrc_mus-liver-zon-2/jrc_mus-liver-zon-2.zarr/recon-1/em/fibsem-uint8
tissue/other/jrc_mus-pancreas-1:
contrast:
- 153
- 216
crops:
- crop106
raw: /nrs/cellmap/data/jrc_mus-pancreas-1/jrc_mus-pancreas-1.zarr/recon-1/em/fibsem-uint8
tissue/other/jrc_ut21-1413-003:
contrast:
- 0
- 165
crops:
- crop192
- crop193
- crop191
- crop200
- crop195
- crop199
- crop198
- crop190
- crop220
- crop197
- crop214
- crop196
- crop224
- crop222
- crop228
- crop226
- crop227
- crop225
raw: /nrs/cellmap/data/jrc_ut21-1413-003/jrc_ut21-1413-003.zarr/recon-1/em/fibsem-uint8
tissue/other/jrc_zf-cardiac-1:
contrast:
- 0
- 255
crops:
- crop318
raw: /nrs/cellmap/data/jrc_zf-cardiac-1/jrc_zf-cardiac-1.zarr/recon-1/em/fibsem-uint8
gt_path: /nrs/saalfeld/heinrichl/data/cellmap_labels/fly_organelles/