Names for forwards and reverse reads does not match. Cannot continue

[kdyoung100]

seroba runSerotyping databases=/data1/tools/seroba_db/database/ read1=1_S1_1.fq.gz read2= 1_S1_2.fq.gz prefix=/home/kdyoung/seroba/

vesion=1.0.2
sample name= 1_S1_1.fq.gz 1_S1_2.fq.gz

what happen?

plz solve

[arif-tanmoy]

Hi @kdyoung100 - pneumocat only accepts the *.fastq.gz format. Just rename the files to 1_S1_1.fastq.gz & 1_S1_2.fastq.gz. It should work.

[genostack]

seroba runSerotyping 1_S1_1.fastq.gz 1_S1_2.fastq.gz serotype
will work