Java exception when loading CLion

[jurnix]

Error raised when CLion was loaded. Run on Ubuntu 22.04.

About info:

CLion 2023.2.1
Build #CL-232.9559.58, built on August 22, 2023
Licensed to albert jornet puig
You have a perpetual fallback license for this version.
Subscription is active until December 8, 2024.
Runtime version: 17.0.8+7-b1000.8 amd64
VM: OpenJDK 64-Bit Server VM by JetBrains s.r.o.
Linux 5.19.0-32-generic
GC: G1 Young Generation, G1 Old Generation
Memory: 3984M
Cores: 16
Registry:
    run.processes.with.pty=TRUE
    ide.experimental.ui=true
    debugger.attach.dialog.enabled=true

Non-Bundled Plugins:
    com.nasller.CodeGlancePro (1.7.4)
    com.compilerexplorer.compilerexplorer (2.7)
    org.jetbrains.fortran (2023.2.2)
    net.seesharpsoft.intellij.plugins.csv (3.2.1-232)
    mobi.hsz.idea.gitignore (4.5.1)

Current Desktop: ubuntu:GNOME

Stacktrace:

Outdated stub in index: .../mo_dfire_sf_emissions_class.f90 indexing timestamp = 1693237389584, binary = false, byte size = 5184, char size = 5198, doc=DocumentImpl[.../mo_dfire_sf_emissions_class.f90], docSaved=true, wasIndexedAlready=true, queried at 1693237389584
doc length=5184
file length=5184
cached PSI class org.jetbrains.fortran.lang.psi.FortranFile
projects with file: 1
physical file exists; length = 5184
   
   java.lang.Exception
	at com.intellij.psi.stubs.StubTreeLoaderImpl.diagnoseLengthMismatch(StubTreeLoaderImpl.java:189)
	at com.intellij.psi.stubs.StubTreeLoaderImpl.checkLengthMatch(StubTreeLoaderImpl.java:155)
	at com.intellij.psi.stubs.StubTreeLoaderImpl.readFromVFile(StubTreeLoaderImpl.java:122)
	at com.intellij.psi.stubs.StubTreeLoaderImpl.readOrBuild(StubTreeLoaderImpl.java:48)
	at com.intellij.psi.impl.source.PsiFileImpl.getStubTree(PsiFileImpl.java:624)
	at com.intellij.psi.impl.source.PsiFileImpl.getStub(PsiFileImpl.java:589)
	at org.jetbrains.fortran.lang.psi.FortranFile$programUnits$1.invoke(FortranFile.kt:16)
	at org.jetbrains.fortran.lang.psi.FortranFile$programUnits$1.invoke(FortranFile.kt:15)
	at com.intellij.openapi.application.ActionsKt.runReadAction$lambda$3(actions.kt:31)
	at com.intellij.openapi.application.impl.ApplicationImpl.runReadAction(ApplicationImpl.java:909)
	at com.intellij.openapi.application.ActionsKt.runReadAction(actions.kt:31)
	at org.jetbrains.fortran.lang.psi.FortranFile.getProgramUnits(FortranFile.kt:15)
	at org.jetbrains.fortran.lang.resolve.FortranPathReferenceImpl.programUnitsFromFile(FortranPathReferenceImpl.kt:314)
	at org.jetbrains.fortran.lang.resolve.FortranPathReferenceImpl.resolveInProjectFiles(FortranPathReferenceImpl.kt:218)
	at org.jetbrains.fortran.lang.resolve.FortranPathReferenceImpl.resolveName(FortranPathReferenceImpl.kt:164)
	at org.jetbrains.fortran.lang.resolve.FortranPathReferenceImpl.resolveWithoutFiltering(FortranPathReferenceImpl.kt:59)
	at org.jetbrains.fortran.lang.resolve.FortranPathReferenceImpl.resolveInner(FortranPathReferenceImpl.kt:23)
	at org.jetbrains.fortran.lang.resolve.FortranReferenceBase.multiResolve$lambda$0(FortranReferenceBase.kt:24)
	at com.intellij.psi.impl.source.resolve.ResolveCache.lambda$resolveWithCaching$1(ResolveCache.java:159)
	at com.intellij.openapi.util.Computable.get(Computable.java:16)
	at com.intellij.psi.impl.source.resolve.ResolveCache.lambda$loggingResolver$4(ResolveCache.java:234)
	at com.intellij.openapi.util.RecursionManager$1.computePreventingRecursion(RecursionManager.java:110)
	at com.intellij.openapi.util.RecursionGuard.doPreventingRecursion(RecursionGuard.java:27)
	at com.intellij.openapi.util.RecursionManager.doPreventingRecursion(RecursionManager.java:65)
	at com.intellij.psi.impl.source.resolve.ResolveCache.resolve(ResolveCache.java:212)
	at com.intellij.psi.impl.source.resolve.ResolveCache.resolveWithCaching(ResolveCache.java:158)
	at com.intellij.psi.impl.source.resolve.ResolveCache.resolveWithCaching(ResolveCache.java:145)
	at org.jetbrains.fortran.lang.resolve.FortranReferenceBase.multiResolve(FortranReferenceBase.kt:23)
	at com.intellij.psi.PsiPolyVariantReferenceBase.resolve(PsiPolyVariantReferenceBase.java:47)
	at com.intellij.codeInsight.TargetElementUtilBase.getReferencedElement(TargetElementUtilBase.java:176)
	at com.intellij.codeInsight.TargetElementUtilBase.doGetReferenceOrReferencedElement(TargetElementUtilBase.java:164)
	at com.intellij.codeInsight.TargetElementUtilBase.getReferenceOrReferencedElement(TargetElementUtilBase.java:209)
	at com.intellij.codeInsight.TargetElementUtilBase.getReferencedElement(TargetElementUtilBase.java:253)
	at com.intellij.codeInsight.TargetElementUtilBase.doFindTargetElement(TargetElementUtilBase.java:232)
	at com.intellij.codeInsight.TargetElementUtilBase.findTargetElement(TargetElementUtilBase.java:297)
	at com.intellij.codeInsight.TargetElementUtil.findTargetElement(TargetElementUtil.java:147)
	at com.jetbrains.cidr.lang.psi.impl.OCTargetElementUtil.findTargetElement(OCTargetElementUtil.java:47)
	at com.intellij.model.psi.impl.TargetsKt.fromTargetEvaluator(targets.kt:175)
	at com.intellij.model.psi.impl.TargetsKt.declarationsOrReferences(targets.kt:136)
	at com.intellij.model.psi.impl.TargetsKt.declaredReferencedData(targets.kt:42)
	at com.intellij.model.psi.impl.TargetsKt.targetSymbols(targets.kt:24)
	at com.intellij.codeInsight.daemon.impl.IdentifierHighlighterPass.getTargetSymbols(IdentifierHighlighterPass.java:216)
	at com.intellij.codeInsight.daemon.impl.IdentifierHighlighterPass.highlightReferencesAndDeclarations(IdentifierHighlighterPass.java:208)
	at com.intellij.codeInsight.daemon.impl.IdentifierHighlighterPass.doCollectInformation(IdentifierHighlighterPass.java:97)
	at com.intellij.codeInsight.highlighting.BackgroundHighlighter.lambda$submitIdentifierHighlighterPass$5(BackgroundHighlighter.java:219)
	at com.intellij.codeInsight.daemon.impl.HighlightingSessionImpl.runInsideHighlightingSession(HighlightingSessionImpl.java:157)
	at com.intellij.codeInsight.highlighting.BackgroundHighlighter.lambda$submitIdentifierHighlighterPass$6(BackgroundHighlighter.java:217)
	at com.intellij.openapi.progress.util.ProgressIndicatorUtilService.runActionAndCancelBeforeWrite(ProgressIndicatorUtilService.java:63)
	at com.intellij.openapi.progress.util.ProgressIndicatorUtils.runActionAndCancelBeforeWrite(ProgressIndicatorUtils.java:133)
	at com.intellij.openapi.progress.util.ProgressIndicatorUtils.lambda$runWithWriteActionPriority$1(ProgressIndicatorUtils.java:114)
	at com.intellij.openapi.progress.ProgressManager.lambda$runProcess$0(ProgressManager.java:71)
	at com.intellij.openapi.progress.impl.CoreProgressManager.lambda$runProcess$2(CoreProgressManager.java:186)
	at com.intellij.openapi.progress.impl.CoreProgressManager.lambda$executeProcessUnderProgress$13(CoreProgressManager.java:604)
	at com.intellij.openapi.progress.impl.CoreProgressManager.registerIndicatorAndRun(CoreProgressManager.java:679)
	at com.intellij.openapi.progress.impl.CoreProgressManager.computeUnderProgress(CoreProgressManager.java:635)
	at com.intellij.openapi.progress.impl.CoreProgressManager.executeProcessUnderProgress(CoreProgressManager.java:603)
	at com.intellij.openapi.progress.impl.ProgressManagerImpl.executeProcessUnderProgress(ProgressManagerImpl.java:61)
	at com.intellij.openapi.progress.impl.CoreProgressManager.runProcess(CoreProgressManager.java:173)
	at com.intellij.openapi.progress.ProgressManager.runProcess(ProgressManager.java:71)
	at com.intellij.openapi.progress.util.ProgressIndicatorUtils.runWithWriteActionPriority(ProgressIndicatorUtils.java:111)
	at com.intellij.codeInsight.highlighting.BackgroundHighlighter.lambda$submitIdentifierHighlighterPass$7(BackgroundHighlighter.java:214)
	at com.intellij.openapi.application.impl.NonBlockingReadActionImpl$OTelMonitor.callWrapped(NonBlockingReadActionImpl.java:832)
	at com.intellij.openapi.application.impl.NonBlockingReadActionImpl$OTelMonitor$MonitoredComputation.call(NonBlockingReadActionImpl.java:864)
	at com.intellij.openapi.application.impl.NonBlockingReadActionImpl$Submission.insideReadAction(NonBlockingReadActionImpl.java:602)
	at com.intellij.openapi.application.impl.NonBlockingReadActionImpl$Submission.lambda$attemptComputation$4(NonBlockingReadActionImpl.java:565)
	at com.intellij.openapi.application.impl.ApplicationImpl.tryRunReadAction(ApplicationImpl.java:1133)
	at com.intellij.openapi.progress.util.ProgressIndicatorUtils.lambda$runInReadActionWithWriteActionPriority$0(ProgressIndicatorUtils.java:76)
	at com.intellij.openapi.progress.util.ProgressIndicatorUtilService.runActionAndCancelBeforeWrite(ProgressIndicatorUtilService.java:63)
	at com.intellij.openapi.progress.util.ProgressIndicatorUtils.runActionAndCancelBeforeWrite(ProgressIndicatorUtils.java:133)
	at com.intellij.openapi.progress.util.ProgressIndicatorUtils.lambda$runWithWriteActionPriority$1(ProgressIndicatorUtils.java:114)
	at com.intellij.openapi.progress.ProgressManager.lambda$runProcess$0(ProgressManager.java:71)
	at com.intellij.openapi.progress.impl.CoreProgressManager.lambda$runProcess$2(CoreProgressManager.java:186)
	at com.intellij.openapi.progress.impl.CoreProgressManager.lambda$executeProcessUnderProgress$13(CoreProgressManager.java:604)
	at com.intellij.openapi.progress.impl.CoreProgressManager.registerIndicatorAndRun(CoreProgressManager.java:679)
	at com.intellij.openapi.progress.impl.CoreProgressManager.computeUnderProgress(CoreProgressManager.java:635)
	at com.intellij.openapi.progress.impl.CoreProgressManager.executeProcessUnderProgress(CoreProgressManager.java:603)
	at com.intellij.openapi.progress.impl.ProgressManagerImpl.executeProcessUnderProgress(ProgressManagerImpl.java:61)
	at com.intellij.openapi.progress.impl.CoreProgressManager.runProcess(CoreProgressManager.java:173)
	at com.intellij.openapi.progress.ProgressManager.runProcess(ProgressManager.java:71)
	at com.intellij.openapi.progress.util.ProgressIndicatorUtils.runWithWriteActionPriority(ProgressIndicatorUtils.java:111)
	at com.intellij.openapi.progress.util.ProgressIndicatorUtils.runInReadActionWithWriteActionPriority(ProgressIndicatorUtils.java:76)
	at com.intellij.openapi.application.impl.NonBlockingReadActionImpl$Submission.attemptComputation(NonBlockingReadActionImpl.java:565)
	at com.intellij.openapi.application.impl.NonBlockingReadActionImpl$Submission.lambda$transferToBgThread$1(NonBlockingReadActionImpl.java:466)
	at com.intellij.openapi.application.impl.NonBlockingReadActionImpl$Submission.lambda$transferToBgThread$2(NonBlockingReadActionImpl.java:481)
	at java.base/java.util.concurrent.ThreadPoolExecutor.runWorker(ThreadPoolExecutor.java:1136)
	at java.base/java.util.concurrent.ThreadPoolExecutor$Worker.run(ThreadPoolExecutor.java:635)
	at java.base/java.util.concurrent.Executors$PrivilegedThreadFactory$1$1.run(Executors.java:702)
	at java.base/java.util.concurrent.Executors$PrivilegedThreadFactory$1$1.run(Executors.java:699)
	at java.base/java.security.AccessController.doPrivileged(AccessController.java:399)
	at java.base/java.util.concurrent.Executors$PrivilegedThreadFactory$1.run(Executors.java:699)
	at java.base/java.lang.Thread.run(Thread.java:833)

File:

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MODULE mo_dfire_sf_emissions_class
#ifndef __NO_JSBACH__

#include "dsl_jsbach.inc"

  USE mo_kind,                ONLY: wp
  USE mo_jsb_control,         ONLY: debug_on
  USE mo_exception,           ONLY: message

  USE mo_dfire_sf_fconsump_dead_class, ONLY: t_sf_fc_dead
  USE mo_dfire_sf_fconsump_live_class, ONLY: t_sf_fc_live
  USE mo_dfire_sf_adaptor,             ONLY: t_sf_adaptor

  IMPLICIT NONE

  PRIVATE
  PUBLIC :: t_sf_emissions

  CHARACTER(len=*), PARAMETER :: modname = 'mo_dfire_sf_emissions_class'

  TYPE :: t_sf_emissions
    INTEGER :: nc
    INTEGER :: nspecs  !< total number of emission factors [-]
    INTEGER :: nfclass !< total number of fuel classes [-]

    REAL(wp), allocatable           :: emission_factors(:) !< emission factors
    REAL(wp), allocatable           :: emissions(:,:) !< emissions [g X m-2]

    CLASS(t_sf_fc_dead), allocatable :: fc_dead
    CLASS(t_sf_fc_live), allocatable :: fc_live
  CONTAINS
    PROCEDURE :: calc
    PROCEDURE :: get
  END TYPE t_sf_emissions


  INTERFACE  t_sf_emissions
    MODULE PROCEDURE :: create_t_sf_emissions
  END INTERFACE

CONTAINS

  !>
  !> Constructor
  !>
  FUNCTION create_t_sf_emissions(nc, nspecs, nfclass, em, fc_dead, fc_live) RESULT (sf_emissions)
    INTEGER, INTENT(in)            :: nc
    INTEGER, INTENT(in)            :: nfclass    !< 
    INTEGER, INTENT(in)            :: nspecs     !< 
    REAL(wp), INTENT(in)           :: em(nspecs) !< 
    CLASS(t_sf_fc_dead), INTENT(in) :: fc_dead
    CLASS(t_sf_fc_live), INTENT(in) :: fc_live
    TYPE(t_sf_emissions) :: sf_emissions !< output
    sf_emissions % nc = nc
    sf_emissions % nfclass = nfclass
    allocate(sf_emissions % fc_dead, source=fc_dead)
    allocate(sf_emissions % fc_live, source=fc_live)

    sf_emissions % nspecs = nspecs
    allocate(sf_emissions % emission_factors, source = em)

    allocate(sf_emissions % emissions(nc, nspecs))
    sf_emissions % emissions(:,:) = 0._wp
  END FUNCTION create_t_sf_emissions


  ! ======================================================================================================= !
  !>
  !> 
  !>
  !> 
  !>
  SUBROUTINE calc(this)
    CLASS(t_sf_emissions), INTENT(inout) :: this
    INTEGER :: ispec, ifuel, ilvpool

    INTEGER, PARAMETER :: DEAD_FUELCLASS_IDX = 2
    REAL(wp) :: fc_dead(this % nc, this % nfclass) !< 
    REAL(wp), ALLOCATABLE :: fc_live(:,:,:) !< 
    REAL(wp) :: fc_dead_total(this % nc) !< 
    REAL(wp) :: fc_live_total(this % nc) !< 
    REAL(wp) :: bb_tot(this % nc)        !< 
    REAL(wp) :: bb_tot_kg(this % nc)     !< 
    INTEGER :: inc, ispecs
    TYPE(t_sf_adaptor) :: sf_adaptor

    sf_adaptor = t_sf_adaptor(this % nc)

    ! 
    fc_dead = this % fc_dead % get() !< [gDM/m2]
    fc_live = this % fc_live % get() !< [gDM/m2]

    ! sum all
    fc_dead_total = SUM(fc_dead, dim=DEAD_FUELCLASS_IDX)

    DO inc = 1, this % nc
      fc_live_total(inc) = sum(fc_live(inc,:,:))
    END DO

    ! 
    bb_tot(:) = fc_dead_total(:) + fc_live_total(:)

    bb_tot_kg(:) = sf_adaptor % convert_units("g", "kg", bb_tot)

    ! 
    DO ispecs=1, this % nspecs
      this % emissions(:,ispecs) = this % emission_factors(ispecs) * bb_tot_kg(:)
    END DO

  END SUBROUTINE calc


  ! ======================================================================================================= !
  !>
  !> 
  !>
  FUNCTION get(this) RESULT (emissions)
    CLASS(t_sf_emissions), INTENT(in) :: this
    REAL(wp) :: emissions(this % nc, this % nspecs)
    emissions(:,:) = this % emissions(:,:)
  END FUNCTION get

#endif
END MODULE mo_dfire_sf_emissions_class