From 4edee29ecbf52ca46d7e38db4eee370b31c13566 Mon Sep 17 00:00:00 2001
From: LouiseDck <louise.deconinck@gmail.com>
Date: Thu, 12 Dec 2024 21:24:17 +0100
Subject: [PATCH] Install hdf5tools in workflow

---
 .github/workflows/R-CMD-check.yaml | 11 +++++++++++
 1 file changed, 11 insertions(+)

diff --git a/.github/workflows/R-CMD-check.yaml b/.github/workflows/R-CMD-check.yaml
index cb01cbd3..acc8f232 100644
--- a/.github/workflows/R-CMD-check.yaml
+++ b/.github/workflows/R-CMD-check.yaml
@@ -64,6 +64,17 @@ jobs:
           reticulate::py_install(c("anndata", "scanpy", "dummy-anndata"), pip = TRUE)
         shell: Rscript {0}
 
+      - name: Install h5diff
+        run:   |
+              if [ "$RUNNER_OS" == "Linux" ]; then
+                    sudo apt-get install hdf5tools
+              else
+                    echo "$RUNNER_OS not supported"
+                    exit 1
+              fi
+        shell: bash
+
+
       - uses: r-lib/actions/check-r-package@v2
         with:
           upload-snapshots: true