diff --git a/.pre-commit-config.yaml b/.pre-commit-config.yaml
index b26ce44a..fd240b75 100644
--- a/.pre-commit-config.yaml
+++ b/.pre-commit-config.yaml
@@ -7,13 +7,13 @@ default_stages:
 minimum_pre_commit_version: 2.9.3
 repos:
     - repo: https://github.com/pre-commit/mirrors-mypy
-      rev: v1.6.0
+      rev: v1.6.1
       hooks:
           - id: mypy
             additional_dependencies: [numpy, pandas, types-requests]
             exclude: .scripts/ci/download_data.py|squidpy/datasets/_(dataset|image).py # See https://github.com/pre-commit/mirrors-mypy/issues/33
     - repo: https://github.com/psf/black
-      rev: 23.9.1
+      rev: 23.10.0
       hooks:
           - id: black
             additional_dependencies: [toml]
@@ -56,7 +56,7 @@ repos:
           - id: blacken-docs
     - repo: https://github.com/astral-sh/ruff-pre-commit
       # Ruff version.
-      rev: v0.0.292
+      rev: v0.1.1
       hooks:
           - id: ruff
             args: [--fix, --exit-non-zero-on-fix]