From 832f85f0db701f72b96fd12e9b0c783fe7723348 Mon Sep 17 00:00:00 2001 From: Stuart Owen Date: Fri, 21 Jun 2024 10:20:46 +0100 Subject: [PATCH 1/5] tweak datahub changes bullet point --- tech/releases/index.md | 2 +- 1 file changed, 1 insertion(+), 1 deletion(-) diff --git a/tech/releases/index.md b/tech/releases/index.md index 815097a105..42b2cc05cd 100644 --- a/tech/releases/index.md +++ b/tech/releases/index.md @@ -23,7 +23,7 @@ A patch release that includes some important bug fixes and improvements, in part * Fix to correctly transfer Sample sharing policies from the originating Data file when extracted. * Fix to the page shown when starting to import a DMP. * Better error handing and reporting when BiVeS model comparison fails. -* Various small Datahub and Single Page View fixes and improvements. +* Various small fixes and improvements, regarding Experiment Sample Templates and the Single Page View. For a full list, see [closed issues for 1.15.1](https://github.com/seek4science/seek/milestone/22?closed=1) From 743f044a759c2d7f94bf8e192b08a8f5e090b7e2 Mon Sep 17 00:00:00 2001 From: Stuart Owen Date: Thu, 18 Jul 2024 13:33:29 +0100 Subject: [PATCH 2/5] updates for 1.15.2 --- _config.yml | 2 +- tech/releases/index.md | 11 +++++++++++ tech/upgrading.md | 8 ++++---- 3 files changed, 16 insertions(+), 5 deletions(-) diff --git a/_config.yml b/_config.yml index 6c3bd2dc6c..907c249a10 100644 --- a/_config.yml +++ b/_config.yml @@ -1,6 +1,6 @@ #baseurl: /seek -current_seek_version: "1.15.1" +current_seek_version: "1.15.2" current_docker_tag: "1.15" plugins: diff --git a/tech/releases/index.md b/tech/releases/index.md index 42b2cc05cd..e934e6af23 100644 --- a/tech/releases/index.md +++ b/tech/releases/index.md @@ -11,6 +11,17 @@ Please see [Getting FAIRDOM-SEEK](/get-seek.html) for details about installing S If you have any comments or feedback about a release, then please [Contact Us](/contacting-us.html) +## Version 1.15.2 + +Release date: _18th July 2024_ + +A patch release with a couple of small fixes: + +* Fix to XLSX files incorrectly being detected and changed to a zip mime type in some cases when a processing error occurs. +* Fix to losing the temporary access code in the URL when switching between versions or clicking on the "Back to Model" button. + +For a full list, see [closed issues for 1.15.2](https://github.com/seek4science/seek/milestone/25?closed=1) + ## Version 1.15.1 Release date: _20th June 2024_ diff --git a/tech/upgrading.md b/tech/upgrading.md index 4fbe779806..4b1ba2aea0 100644 --- a/tech/upgrading.md +++ b/tech/upgrading.md @@ -71,17 +71,17 @@ If you have an existing installation linked to our GitHub, you can fetch the files with: git fetch - git checkout v1.15.1 + git checkout v1.15.2 #### Updating using the tarball You can download the file from - You can + You can unpack this file using: - tar zxvf seek-1.15.1.tar.gz + tar zxvf seek-1.15.2.tar.gz mv seek seek-previous - mv seek-1.15.1 seek + mv seek-1.15.2 seek cd seek/ and then copy across your existing filestore and database configuration file From c5865af78c7857be6b00fa83687ad81ecf2c41cf Mon Sep 17 00:00:00 2001 From: Stuart Owen Date: Fri, 23 Aug 2024 15:17:18 +0100 Subject: [PATCH 3/5] lock ffi gem version, avoids a version conflict error with ruby version --- Gemfile | 1 + 1 file changed, 1 insertion(+) diff --git a/Gemfile b/Gemfile index 5dafa73f64..166abcba6b 100644 --- a/Gemfile +++ b/Gemfile @@ -1,6 +1,7 @@ source 'https://rubygems.org' gem 'github-pages' +gem "ffi","1.16.3" gem 'jekyll-sitemap' gem 'jekyll-redirect-from' gem 'html-proofer' From 3088414c7babb58dc73c234bbbdb432ca56766d4 Mon Sep 17 00:00:00 2001 From: Stuart Owen Date: Fri, 23 Aug 2024 15:30:10 +0100 Subject: [PATCH 4/5] fixed a couple of links that pointed to the old gh-pages branch --- contributing-to-pages.md | 7 ++----- 1 file changed, 2 insertions(+), 5 deletions(-) diff --git a/contributing-to-pages.md b/contributing-to-pages.md index bfaf7f5ba5..68b61811ff 100644 --- a/contributing-to-pages.md +++ b/contributing-to-pages.md @@ -7,10 +7,7 @@ layout: page If you find a mistake or wish to make an improvement to these pages, you can do so. For a small mistake, just let us know by [contacting us](contacting-us.html). For other changes you can also access and edit the pages themself. -As well as the SEEK source code, these pages are also stored in GitHub at [https://github.com/seek4science/seek](https://github.com/seek4science/seek) -and served by [GitHub pages](https://pages.github.com/). - -They are under the branch [_gh-pages_](https://github.com/seek4science/seek/tree/gh-pages). Pages are in [Markdown](https://help.github.com/articles/markdown-basics/) format, with a _.md_ extension, but get converted into HTML for you. +These pages can be found in Github at [https://github.com/seek4science/seek-documentation](https://github.com/seek4science/seek-documentation). Pages are in [Markdown](https://help.github.com/articles/markdown-basics/) format, with a _.md_ extension, but get converted into HTML for you. New pages require a formatter at the top, that looks like: --- @@ -18,7 +15,7 @@ New pages require a formatter at the top, that looks like: layout: page --- -For example, this page can be found at [https://raw.githubusercontent.com/seek4science/seek/gh-pages/contributing-to-pages.md](https://raw.githubusercontent.com/seek4science/seek/gh-pages/contributing-to-pages.md) +For example, this page can be found at [https://raw.githubusercontent.com/seek4science/seek-documentation/main/contributing-to-pages.md](https://raw.githubusercontent.com/seek4science/seek-documentation/main/contributing-to-pages.md) If you want to view your changes as you edit them, with Ruby installed you can install and run Jekyll with: From 873a2418cfb22f7a57f5e797d349f98e043be227 Mon Sep 17 00:00:00 2001 From: Stuart Owen Date: Fri, 23 Aug 2024 16:02:18 +0100 Subject: [PATCH 5/5] refreshed the useful links --- contributing-to-pages.md | 2 +- tech/useful-links.md | 8 +++----- 2 files changed, 4 insertions(+), 6 deletions(-) diff --git a/contributing-to-pages.md b/contributing-to-pages.md index 68b61811ff..e574afa7b1 100644 --- a/contributing-to-pages.md +++ b/contributing-to-pages.md @@ -23,6 +23,6 @@ If you want to view your changes as you edit them, with Ruby installed you can i bundle install bundle exec jekyll serve -and then goto [localhost:4000/seek/](http://localhost:4000/seek/). For more information please see [Using Jekyll with Pages](https://help.github.com/articles/using-jekyll-with-pages/) +and then goto [localhost:4000](http://localhost:4000). For more information please see [Using Jekyll with Pages](https://help.github.com/articles/using-jekyll-with-pages/) You can make a change by forking and issuing a pull request. If contributing through GitHub is unfamiliar to you, please read [Contributing to Open Source on GitHub](https://guides.github.com/activities/contributing-to-open-source/) diff --git a/tech/useful-links.md b/tech/useful-links.md index 835d40b14b..4843651c45 100644 --- a/tech/useful-links.md +++ b/tech/useful-links.md @@ -7,9 +7,7 @@ FAIRDOM Website: [https://fair-dom.org](https://fair-dom.org) SEEK Github page: [https://github.com/seek4science/seek](https://github.com/seek4science/seek) -SEEK JIRA - Issue tracking: [https://fair-dom.org/issues](https://fair-dom.org/issues) - -​Continuous Integration testing (Travis): [https://travis-ci.org/seek4science/seek](https://travis-ci.org/seek4science/seek) +SEEK Issue tracking: [https://fair-dom.org/issues](https://fair-dom.org/issues) SEEK software website: [https://seek4science.org](https://seek4science.org) @@ -17,8 +15,8 @@ SEEK installation guide: [/tech/install.html](/tech/install.html) SEEK changelog: [/tech/releases/](/tech/releases) -JERM ontology: [https://github.com/SysMO-DB/JERMOntology](https://github.com/SysMO-DB/JERMOntology) +JERM ontology: [https://jermontology.org](https://jermontology.org) -SEEK demo site: [https://demo.sysmo-db.org](https://demo.sysmo-db.org) +SEEK demo site: [https://demo.seek4science.org](https://demo.seek4science.org) SEEK test site: [https://testing.sysmo-db.org](https://testing.sysmo-db.org)