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How to deal with antisense transcripts #15

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gsheynkman opened this issue Jul 16, 2021 · 0 comments
Open

How to deal with antisense transcripts #15

gsheynkman opened this issue Jul 16, 2021 · 0 comments
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design high-level design ideas, brainstorming postponed This should be handled in the future, but is low priority right now

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@gsheynkman
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strand = {orf.strand for orf in self.orfs}
if len(strand) > 1:
raise ValueError("Can't plot isoforms from different strands")
self.strand: Strand = list(strand)[0]

Currently - the isoimage code only takes in same-strand ORFs for plotting.
We need to think about what to with antisense transcripts, which are prevalent in our long-read data, as well as GENCODE.

@gsheynkman gsheynkman added the design high-level design ideas, brainstorming label Jul 16, 2021
@jsaquing jsaquing added the postponed This should be handled in the future, but is low priority right now label Aug 25, 2021
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Labels
design high-level design ideas, brainstorming postponed This should be handled in the future, but is low priority right now
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