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Batch query submission? #10

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RhysGillman opened this issue Feb 12, 2024 · 2 comments
Open

Batch query submission? #10

RhysGillman opened this issue Feb 12, 2024 · 2 comments

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@RhysGillman
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I was wondering if it possible to submit queries for many samples at once? I am interested in running the multi-omics analysis on possibly hundreds of samples, but the web UI only allows me to submit one job at a time.
I thought I could use the API for this with the POST https://www.pandrugs.org/pandrugs-backend/api/variantsanalysis/login/ query, however I haven't been able to try this as the account registration is also not working for me so I don't have a login.

@lipido
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lipido commented Feb 15, 2024

Dear RhysGillman,
Thank you for your interest in Pandrugs. Yes, I see several attempts to create your account, but maybe the activation could not be sent. We will contact you using one of your mails provided.
Cheers!

@lipido lipido closed this as completed Feb 15, 2024
@lipido lipido reopened this Feb 16, 2024
@lipido
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lipido commented Feb 16, 2024

You as in the backend documentation (https://www.pandrugs.org/pandrugs-backend/#-248784960) you can submit your VCF for analysis. If you submit more than one, I would recommend that you send it one by one, in order not to make our server too busy.
Your authentication credentials go via http basic "Authorization" request header ("Authorization: Basic [token]", where [token] is Login:Pass in base 64 encoding).

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